Cargando…

Compositional and Functional Characteristics of Swine Slurry Microbes through 16S rRNA Metagenomic Sequencing Approach

SIMPLE SUMMARY: The goal of present study was to evaluate and characterize the microbes present in the pig slurry. Samples were collected from three different slurry pits of a pig farm at different storing time points. With the help of a 16S rRNA metagenomic sequencing approach, a detailed catalogue...

Descripción completa

Detalles Bibliográficos
Autores principales:	Kumar, Himansu, Jang, Yu Na, Kim, Kwangmin, Park, Junhyung, Jung, Min Woong, Park, Jong-Eun
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	MDPI 2020
Materias:	Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7460454/ https://www.ncbi.nlm.nih.gov/pubmed/32784779 http://dx.doi.org/10.3390/ani10081372

Ejemplares similares

Full-Length 16S rRNA Gene Amplicon and Metagenome Taxonomic Profiling of Beneficial Microbes in Poultry and Swine Probiotic Product
por: Khongchatee, Adison, et al.
Publicado: (2022)

Metagenomic characterization of swine slurry in a North American swine farm operation
por: Ramesh, Akshaya, et al.
Publicado: (2021)

Comparison of Bacterial Populations in the Ceca of Swine at Two Different Stages and Their Functional Annotations
por: Kumar, Himansu, et al.
Publicado: (2019)

Long-Read 16S rRNA Amplicon and Metagenomic Data of Swine Feed-Additive Probiotics Product
por: Sudjai, Aunthikarn, et al.
Publicado: (2022)

Reconstructing 16S rRNA genes in metagenomic data
por: Yuan, Cheng, et al.
Publicado: (2015)

Rapid analysis of bacterial composition in prosthetic joint infection by 16S rRNA metagenomic sequencing
por: Chen, Mei-Feng, et al.
Publicado: (2019)

Metagenomics of the Viral Community in Three Cattle Slurry Samples
por: Sazinas, Pavelas, et al.
Publicado: (2019)

Evaluation of gastric microbiome and metagenomic function in patients with intestinal metaplasia using 16S rRNA gene sequencing
por: Park, Chan Hyuk, et al.
Publicado: (2018)

The truth about metagenomics: quantifying and counteracting bias in 16S rRNA studies
por: Brooks, J Paul, et al.
Publicado: (2015)

16S rRNA Gene-Based Metagenomic Analysis of Ozark Cave Bacteria
por: Oliveira, Cássia, et al.
Publicado: (2017)

16S rRNA Gene Sequencing Reveals Specific Gut Microbes Common to Medicinal Insects
por: Geng, Jin, et al.
Publicado: (2022)

A feasibility study of conducting surveillance for swine pathogens in slurry from North Carolina swine farms
por: Bailey, Emily S., et al.
Publicado: (2020)

16S rRNA metagenome clustering and diversity estimation using locality sensitive hashing
por: Rasheed, Zeehasham, et al.
Publicado: (2013)

Comparative Analysis of 16S rRNA Gene and Metagenome Sequencing in Pediatric Gut Microbiomes
por: Peterson, Danielle, et al.
Publicado: (2021)

16S-rRNA-Based Metagenomic Profiling of the Bacterial Communities in Traditional Bulgarian Sourdoughs
por: Baev, Vesselin, et al.
Publicado: (2023)

Comparative evaluation of 16S rRNA metagenomic sequencing in the diagnosis and understanding of bacterial endophthalmitis
por: Asao, Kazunobu, et al.
Publicado: (2023)

Integration of SNP genotyping and 16S rRNA amplicon sequencing to identify heritable gut microbes in chickens
por: Zhang, Jinxin, et al.
Publicado: (2023)

Metagenomic Profiling of Known and Unknown Microbes with MicrobeGPS
por: Lindner, Martin S., et al.
Publicado: (2015)

Comprehensive 16S rRNA and metagenomic data from the gut microbiome of aging and rejuvenation mouse models
por: Shin, Jongoh, et al.
Publicado: (2022)

The immune modulatory effects of mitochondrial transplantation on cecal slurry model in rat
por: Hwang, Jung Wook, et al.
Publicado: (2021)

Metagenomic Insights into the Composition and Function of Microbes Associated with the Rootzone of Datura inoxia
por: Senn, Savanah, et al.
Publicado: (2022)

Low frequency aeration of pig slurry affects slurry characteristics and emissions of greenhouse gases and ammonia
por: Calvet, Salvador, et al.
Publicado: (2017)

Different Swine Production Systems Can Shape Slurry Resistome at Mechanism and Class Levels Based on Swine Manure Evaluation
por: Beltrame, Lucas Cafferati, et al.
Publicado: (2022)

Tax4Fun: predicting functional profiles from metagenomic 16S rRNA data
por: Aßhauer, Kathrin P., et al.
Publicado: (2015)

Improved Microbial Community Characterization of 16S rRNA via Metagenome Hybridization Capture Enrichment
por: Beaudry, Megan S., et al.
Publicado: (2021)

Salivary Microbiome in Adenoid Cystic Carcinoma Detected by 16S rRNA Sequencing and Shotgun Metagenomics
por: Jiang, Qian, et al.
Publicado: (2021)

16S rRNA metagenomics data on the bacterial communities in integrated poultry-fish farm ponds
por: Akinde, Sunday B., et al.
Publicado: (2022)

An Overview of Adenoid Microbiome Using 16S rRNA Gene Sequencing-Based Metagenomic Analysis
por: Sokolovs-Karijs, Oļegs, et al.
Publicado: (2022)

Identification of Putative Bacterial Pathogens for Orofacial Granulomatosis Based on 16S rRNA Metagenomic Analysis
por: Wang, Yuanyuan, et al.
Publicado: (2023)

Conservative Fragments in Bacterial 16S rRNA Genes and Primer Design for 16S Ribosomal DNA Amplicons in Metagenomic Studies
por: Wang, Yong, et al.
Publicado: (2009)

16S Classifier: A Tool for Fast and Accurate Taxonomic Classification of 16S rRNA Hypervariable Regions in Metagenomic Datasets
por: Chaudhary, Nikhil, et al.
Publicado: (2015)

VITCOMIC2: visualization tool for the phylogenetic composition of microbial communities based on 16S rRNA gene amplicons and metagenomic shotgun sequencing
por: Mori, Hiroshi, et al.
Publicado: (2018)

Association of gut microbiota composition and function with an aged rat model of senile osteoporosis using 16S rRNA and metagenomic sequencing analysis
por: Ma, Sicong, et al.
Publicado: (2020)

Absolute quantitation of microbes using 16S rRNA gene metabarcoding: A rapid normalization of relative abundances by quantitative PCR targeting a 16S rRNA gene spike‐in standard
por: Zemb, Olivier, et al.
Publicado: (2020)

Tensile Behavior Characteristics of High-Performance Slurry-Infiltrated Fiber-Reinforced Cementitious Composite with Respect to Fiber Volume Fraction
por: Kim, Seungwon, et al.
Publicado: (2019)

The Combined Process of Paper Filtration and Ultrafiltration for the Pretreatment of the Biogas Slurry from Swine Manure
por: Zhan, Yuanhang, et al.
Publicado: (2018)

Compressive Behavior Characteristics of High-Performance Slurry-Infiltrated Fiber-Reinforced Cementitious Composites (SIFRCCs) under Uniaxial Compressive Stress
por: Kim, Seungwon, et al.
Publicado: (2020)

Biochemical Changes and Biological Origin of Key Odor Compound Generations in Pig Slurry during Indoor Storage Periods: A Pyrosequencing Approach
por: Jang, Yu Na, et al.
Publicado: (2018)

Deciphering chicken gut microbial dynamics based on high-throughput 16S rRNA metagenomics analyses
por: Mohd Shaufi, Mohd Asrore, et al.
Publicado: (2015)

Looking for Rhizobacterial Ecological Indicators in Agricultural Soils Using 16S rRNA metagenomic Amplicon Data
por: Valverde, José R., et al.
Publicado: (2016)

Cannot write session to /tmp/vufind_sessions/sess_juapjg9f1dj5pdplkmrg915nc5