Cargando…
A flexible framework for simulating and fitting generalized drift-diffusion models
The drift-diffusion model (DDM) is an important decision-making model in cognitive neuroscience. However, innovations in model form have been limited by methodological challenges. Here, we introduce the generalized drift-diffusion model (GDDM) framework for building and fitting DDM extensions, and p...
Autores principales: | , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
eLife Sciences Publications, Ltd
2020
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7462609/ https://www.ncbi.nlm.nih.gov/pubmed/32749218 http://dx.doi.org/10.7554/eLife.56938 |
_version_ | 1783576953782009856 |
---|---|
author | Shinn, Maxwell Lam, Norman H Murray, John D |
author_facet | Shinn, Maxwell Lam, Norman H Murray, John D |
author_sort | Shinn, Maxwell |
collection | PubMed |
description | The drift-diffusion model (DDM) is an important decision-making model in cognitive neuroscience. However, innovations in model form have been limited by methodological challenges. Here, we introduce the generalized drift-diffusion model (GDDM) framework for building and fitting DDM extensions, and provide a software package which implements the framework. The GDDM framework augments traditional DDM parameters through arbitrary user-defined functions. Models are solved numerically by directly solving the Fokker-Planck equation using efficient numerical methods, yielding a 100-fold or greater speedup over standard methodology. This speed allows GDDMs to be fit to data using maximum likelihood on the full response time (RT) distribution. We demonstrate fitting of GDDMs within our framework to both animal and human datasets from perceptual decision-making tasks, with better accuracy and fewer parameters than several DDMs implemented using the latest methodology, to test hypothesized decision-making mechanisms. Overall, our framework will allow for decision-making model innovation and novel experimental designs. |
format | Online Article Text |
id | pubmed-7462609 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | eLife Sciences Publications, Ltd |
record_format | MEDLINE/PubMed |
spelling | pubmed-74626092020-09-03 A flexible framework for simulating and fitting generalized drift-diffusion models Shinn, Maxwell Lam, Norman H Murray, John D eLife Neuroscience The drift-diffusion model (DDM) is an important decision-making model in cognitive neuroscience. However, innovations in model form have been limited by methodological challenges. Here, we introduce the generalized drift-diffusion model (GDDM) framework for building and fitting DDM extensions, and provide a software package which implements the framework. The GDDM framework augments traditional DDM parameters through arbitrary user-defined functions. Models are solved numerically by directly solving the Fokker-Planck equation using efficient numerical methods, yielding a 100-fold or greater speedup over standard methodology. This speed allows GDDMs to be fit to data using maximum likelihood on the full response time (RT) distribution. We demonstrate fitting of GDDMs within our framework to both animal and human datasets from perceptual decision-making tasks, with better accuracy and fewer parameters than several DDMs implemented using the latest methodology, to test hypothesized decision-making mechanisms. Overall, our framework will allow for decision-making model innovation and novel experimental designs. eLife Sciences Publications, Ltd 2020-08-04 /pmc/articles/PMC7462609/ /pubmed/32749218 http://dx.doi.org/10.7554/eLife.56938 Text en © 2020, Shinn et al http://creativecommons.org/licenses/by/4.0/ http://creativecommons.org/licenses/by/4.0/This article is distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use and redistribution provided that the original author and source are credited. |
spellingShingle | Neuroscience Shinn, Maxwell Lam, Norman H Murray, John D A flexible framework for simulating and fitting generalized drift-diffusion models |
title | A flexible framework for simulating and fitting generalized drift-diffusion models |
title_full | A flexible framework for simulating and fitting generalized drift-diffusion models |
title_fullStr | A flexible framework for simulating and fitting generalized drift-diffusion models |
title_full_unstemmed | A flexible framework for simulating and fitting generalized drift-diffusion models |
title_short | A flexible framework for simulating and fitting generalized drift-diffusion models |
title_sort | flexible framework for simulating and fitting generalized drift-diffusion models |
topic | Neuroscience |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7462609/ https://www.ncbi.nlm.nih.gov/pubmed/32749218 http://dx.doi.org/10.7554/eLife.56938 |
work_keys_str_mv | AT shinnmaxwell aflexibleframeworkforsimulatingandfittinggeneralizeddriftdiffusionmodels AT lamnormanh aflexibleframeworkforsimulatingandfittinggeneralizeddriftdiffusionmodels AT murrayjohnd aflexibleframeworkforsimulatingandfittinggeneralizeddriftdiffusionmodels AT shinnmaxwell flexibleframeworkforsimulatingandfittinggeneralizeddriftdiffusionmodels AT lamnormanh flexibleframeworkforsimulatingandfittinggeneralizeddriftdiffusionmodels AT murrayjohnd flexibleframeworkforsimulatingandfittinggeneralizeddriftdiffusionmodels |