Cargando…

Tracking the COVID-19 pandemic in Australia using genomics

Genomic sequencing has significant potential to inform public health management for SARS-CoV-2. Here we report high-throughput genomics for SARS-CoV-2, sequencing 80% of cases in Victoria, Australia (population 6.24 million) between 6 January and 14 April 2020 (total 1,333 COVID-19 cases). We integr...

Descripción completa

Detalles Bibliográficos
Autores principales:	Seemann, Torsten, Lane, Courtney R., Sherry, Norelle L., Duchene, Sebastian, Gonçalves da Silva, Anders, Caly, Leon, Sait, Michelle, Ballard, Susan A., Horan, Kristy, Schultz, Mark B., Hoang, Tuyet, Easton, Marion, Dougall, Sally, Stinear, Timothy P., Druce, Julian, Catton, Mike, Sutton, Brett, van Diemen, Annaliese, Alpren, Charles, Williamson, Deborah A., Howden, Benjamin P.
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Nature Publishing Group UK 2020
Materias:	Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7462846/ https://www.ncbi.nlm.nih.gov/pubmed/32873808 http://dx.doi.org/10.1038/s41467-020-18314-x

Ejemplares similares

Use of emerging testing technologies and approaches for SARS-CoV-2: review of literature and global experience in an Australian context
por: Graham, Maryza, et al.
Publicado: (2021)

Genomics for Molecular Epidemiology and Detecting Transmission of Carbapenemase-Producing Enterobacterales in Victoria, Australia, 2012 to 2016
por: Sherry, Norelle L., et al.
Publicado: (2019)

Genomics-informed responses in the elimination of COVID-19 in Victoria, Australia: an observational, genomic epidemiological study
por: Lane, Courtney R, et al.
Publicado: (2021)

Genomic Epidemiology and Antimicrobial Resistance Mechanisms of Imported Typhoid in Australia
por: Ingle, Danielle J., et al.
Publicado: (2021)

An ISO-certified genomics workflow for identification and surveillance of antimicrobial resistance
por: Sherry, Norelle L., et al.
Publicado: (2023)

COVID-19: Integrating genomic and epidemiological data to inform public health interventions and policy in Tasmania, Australia
por: Stephens, Nicola, et al.
Publicado: (2021)

An implementation science approach to evaluating pathogen whole genome sequencing in public health
por: Ferdinand, Angeline S., et al.
Publicado: (2021)

Prolonged Outbreak of Multidrug-Resistant Shigella sonnei Harboring bla(CTX-M-27) in Victoria, Australia
por: Ingle, Danielle J., et al.
Publicado: (2020)

The importance of utilizing travel history metadata for informative phylogeographical inferences: a case study of early SARS-CoV-2 introductions into Australia
por: Porter, Ashleigh F., et al.
Publicado: (2023)

Search and Contain: Impact of an Integrated Genomic and Epidemiological Surveillance and Response Program for Control of Carbapenemase-producing Enterobacterales
por: Lane, Courtney R, et al.
Publicado: (2020)

Optimising genomic approaches for identifying vancomycin-resistant Enterococcus faecium transmission in healthcare settings
por: Higgs, Charlie, et al.
Publicado: (2022)

Translating genomics into practice for real-time surveillance and response to carbapenemase-producing Enterobacteriaceae: evidence from a complex multi-institutional KPC outbreak
por: Kwong, Jason C., et al.
Publicado: (2018)

Validation of a single-step, single-tube reverse transcription loop-mediated isothermal amplification assay for rapid detection of SARS-CoV-2 RNA
por: Lee, Jean Y. H., et al.
Publicado: (2020)

The First Isolation and Whole Genome Sequencing of Murray Valley Encephalitis Virus from Cerebrospinal Fluid of a Patient with Encephalitis
por: Russell, Jessica S., et al.
Publicado: (2018)

Population structure, serotype distribution and antibiotic resistance of Streptococcus pneumoniae causing invasive disease in Victoria, Australia
por: Higgs, Charlie, et al.
Publicado: (2023)

Lymphocytic Choriomeningitis Virus Infection, Australia
por: Caly, Leon, et al.
Publicado: (2022)

Whole genome sequencing for tuberculosis in Victoria, Australia: A genomic implementation study from 2017 to 2020
por: Dale, Katie, et al.
Publicado: (2022)

Public health implementation of pathogen genomics: the role for accreditation and application of ISO standards
por: Ballard, Susan A., et al.
Publicado: (2023)

Symptoms and laboratory manifestations of mild COVID-19 in a repatriated cruise ship cohort
por: Bailie, C. R., et al.
Publicado: (2021)

State-wide genomic epidemiology investigations of COVID-19 in healthcare workers in 2020 Victoria, Australia: Qualitative thematic analysis to provide insights for future pandemic preparedness
por: Watt, Anne E., et al.
Publicado: (2022)

Reconstruction of the Genomes of Drug-Resistant Pathogens for Outbreak Investigation through Metagenomic Sequencing
por: Mu, Andre, et al.
Publicado: (2019)

Lab-in-a-van: Rapid SARS-CoV-2 testing response with a mobile laboratory
por: Ballard, Susan A, et al.
Publicado: (2022)

Defective Severe Acute Respiratory Syndrome Coronavirus 2 Immune Responses in an Immunocompromised Individual With Prolonged Viral Replication
por: Gordon, Claire L, et al.
Publicado: (2021)

New rules for genomics-informed COVID-19 responses–Lessons learned from the first waves of the Omicron variant in Australia
por: Porter, Ashleigh F., et al.
Publicado: (2022)

Detection of SARS-CoV-2 in saliva: implications for specimen transport and storage
por: Williams, Eloise, et al.
Publicado: (2020)

Comparison of contemporary invasive and non-invasive Streptococcus pneumoniae isolates reveals new insights into circulating anti-microbial resistance determinants
por: Higgs, Charlie, et al.
Publicado: (2023)

Daptomycin Resistance Occurs Predominantly in vanA-Type Vancomycin-Resistant Enterococcus faecium in Australasia and Is Associated With Heterogeneous and Novel Mutations
por: Li, Lucy, et al.
Publicado: (2021)

The FDA-approved drug ivermectin inhibits the replication of SARS-CoV-2 in vitro
por: Caly, Leon, et al.
Publicado: (2020)

AusTrakka: Fast-tracking nationalized genomics surveillance in response to the COVID-19 pandemic
por: Hoang, Tuyet, et al.
Publicado: (2022)

Feasibility of a refurbished shipping container as a transportable laboratory for rapid SARS-CoV-2 diagnostics
por: Muhi, Stephen, et al.
Publicado: (2022)

Surveillance for SARS‐CoV‐2 variants of concern in the Australian context
por: Andersson, Patiyan, et al.
Publicado: (2021)

Sample pooling on the Cepheid Xpert® Xpress SARS-CoV-2 assay
por: Graham, Maryza, et al.
Publicado: (2021)

Correspondence: Spontaneous secondary mutations confound analysis of the essential two-component system WalKR in Staphylococcus aureus
por: Monk, Ian R., et al.
Publicado: (2017)

Genomic characterisation reveals a dominant lineage of SARS-CoV-2 in Papua New Guinea
por: Palou, Theresa, et al.
Publicado: (2022)

Comprehensive Genomic Investigation of Adaptive Mutations Driving the Low-Level Oxacillin Resistance Phenotype in Staphylococcus aureus
por: Giulieri, Stefano G., et al.
Publicado: (2020)

Multi-site point of care assessment of Abbott ID NOW rapid molecular test for SARS-CoV-2 in a low-prevalence setting
por: Graham, Maryza, et al.
Publicado: (2021)

Complete microbial genomes for public health in Australia and the Southwest Pacific
por: Baines, Sarah L., et al.
Publicado: (2020)

Prospective Whole-Genome Sequencing Enhances National Surveillance of Listeria monocytogenes
por: Kwong, Jason C., et al.
Publicado: (2016)

NGMASTER: in silico multi-antigen sequence typing for Neisseria gonorrhoeae
por: Kwong, Jason C., et al.
Publicado: (2016)

Prolonged Detection of Japanese Encephalitis Virus in Urine and Whole Blood in a Returned Short-term Traveler
por: Huang, G Khai Lin, et al.
Publicado: (2017)

Cannot write session to /tmp/vufind_sessions/sess_mdeoeh18683js4bh30cnpck6lm