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The First Genetic Map for a Psoraleoid Legume (Bituminaria bituminosa) Reveals Highly Conserved Synteny with Phaseoloid Legumes
We present the first genetic map of tedera (Bituminaria bituminosa (L.) C.H. Stirton), a drought-tolerant forage legume from the Canary Islands with useful pharmaceutical properties. It is also the first genetic map for any species in the tribe Psoraleeae (Fabaceae). The map comprises 2042 genotypin...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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MDPI
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7463921/ https://www.ncbi.nlm.nih.gov/pubmed/32752081 http://dx.doi.org/10.3390/plants9080973 |
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author | Nelson, Matthew N. Jabbari, Jafar S. Turakulov, Rust Pradhan, Aneeta Pazos-Navarro, Maria Stai, Jacob S. Cannon, Steven B. Real, Daniel |
author_facet | Nelson, Matthew N. Jabbari, Jafar S. Turakulov, Rust Pradhan, Aneeta Pazos-Navarro, Maria Stai, Jacob S. Cannon, Steven B. Real, Daniel |
author_sort | Nelson, Matthew N. |
collection | PubMed |
description | We present the first genetic map of tedera (Bituminaria bituminosa (L.) C.H. Stirton), a drought-tolerant forage legume from the Canary Islands with useful pharmaceutical properties. It is also the first genetic map for any species in the tribe Psoraleeae (Fabaceae). The map comprises 2042 genotyping-by-sequencing (GBS) markers distributed across 10 linkage groups, consistent with the haploid chromosome count for this species (n = 10). Sequence tags from the markers were used to find homologous matches in the genome sequences of the closely related species in the Phaseoleae tribe: soybean, common bean, and cowpea. No tedera linkage groups align in their entirety to chromosomes in any of these phaseoloid species, but there are long stretches of collinearity that could be used in tedera research for gene discovery purposes using the better-resourced phaseoloid species. Using Ks analysis of a tedera transcriptome against five legume genomes provides an estimated divergence time of 17.4 million years between tedera and soybean. Genomic information and resources developed here will be invaluable for breeding tedera varieties for forage and pharmaceutical purposes. |
format | Online Article Text |
id | pubmed-7463921 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-74639212020-09-04 The First Genetic Map for a Psoraleoid Legume (Bituminaria bituminosa) Reveals Highly Conserved Synteny with Phaseoloid Legumes Nelson, Matthew N. Jabbari, Jafar S. Turakulov, Rust Pradhan, Aneeta Pazos-Navarro, Maria Stai, Jacob S. Cannon, Steven B. Real, Daniel Plants (Basel) Article We present the first genetic map of tedera (Bituminaria bituminosa (L.) C.H. Stirton), a drought-tolerant forage legume from the Canary Islands with useful pharmaceutical properties. It is also the first genetic map for any species in the tribe Psoraleeae (Fabaceae). The map comprises 2042 genotyping-by-sequencing (GBS) markers distributed across 10 linkage groups, consistent with the haploid chromosome count for this species (n = 10). Sequence tags from the markers were used to find homologous matches in the genome sequences of the closely related species in the Phaseoleae tribe: soybean, common bean, and cowpea. No tedera linkage groups align in their entirety to chromosomes in any of these phaseoloid species, but there are long stretches of collinearity that could be used in tedera research for gene discovery purposes using the better-resourced phaseoloid species. Using Ks analysis of a tedera transcriptome against five legume genomes provides an estimated divergence time of 17.4 million years between tedera and soybean. Genomic information and resources developed here will be invaluable for breeding tedera varieties for forage and pharmaceutical purposes. MDPI 2020-07-31 /pmc/articles/PMC7463921/ /pubmed/32752081 http://dx.doi.org/10.3390/plants9080973 Text en © 2020 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Nelson, Matthew N. Jabbari, Jafar S. Turakulov, Rust Pradhan, Aneeta Pazos-Navarro, Maria Stai, Jacob S. Cannon, Steven B. Real, Daniel The First Genetic Map for a Psoraleoid Legume (Bituminaria bituminosa) Reveals Highly Conserved Synteny with Phaseoloid Legumes |
title | The First Genetic Map for a Psoraleoid Legume (Bituminaria bituminosa) Reveals Highly Conserved Synteny with Phaseoloid Legumes |
title_full | The First Genetic Map for a Psoraleoid Legume (Bituminaria bituminosa) Reveals Highly Conserved Synteny with Phaseoloid Legumes |
title_fullStr | The First Genetic Map for a Psoraleoid Legume (Bituminaria bituminosa) Reveals Highly Conserved Synteny with Phaseoloid Legumes |
title_full_unstemmed | The First Genetic Map for a Psoraleoid Legume (Bituminaria bituminosa) Reveals Highly Conserved Synteny with Phaseoloid Legumes |
title_short | The First Genetic Map for a Psoraleoid Legume (Bituminaria bituminosa) Reveals Highly Conserved Synteny with Phaseoloid Legumes |
title_sort | first genetic map for a psoraleoid legume (bituminaria bituminosa) reveals highly conserved synteny with phaseoloid legumes |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7463921/ https://www.ncbi.nlm.nih.gov/pubmed/32752081 http://dx.doi.org/10.3390/plants9080973 |
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