Cargando…

Deep Learning-Based Segmentation and Quantification of Retinal Capillary Non-Perfusion on Ultra-Wide-Field Retinal Fluorescein Angiography

Reliable outcome measures are required for clinical trials investigating novel agents for preventing progression of capillary non-perfusion (CNP) in retinal vascular diseases. Currently, accurate quantification of topographical distribution of CNP on ultrawide field fluorescein angiography (UWF-FA)...

Descripción completa

Detalles Bibliográficos
Autores principales: Nunez do Rio, Joan M., Sen, Piyali, Rasheed, Rajna, Bagchi, Akanksha, Nicholson, Luke, Dubis, Adam M., Bergeles, Christos, Sivaprasad, Sobha
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7464218/
https://www.ncbi.nlm.nih.gov/pubmed/32781564
http://dx.doi.org/10.3390/jcm9082537
_version_ 1783577313444626432
author Nunez do Rio, Joan M.
Sen, Piyali
Rasheed, Rajna
Bagchi, Akanksha
Nicholson, Luke
Dubis, Adam M.
Bergeles, Christos
Sivaprasad, Sobha
author_facet Nunez do Rio, Joan M.
Sen, Piyali
Rasheed, Rajna
Bagchi, Akanksha
Nicholson, Luke
Dubis, Adam M.
Bergeles, Christos
Sivaprasad, Sobha
author_sort Nunez do Rio, Joan M.
collection PubMed
description Reliable outcome measures are required for clinical trials investigating novel agents for preventing progression of capillary non-perfusion (CNP) in retinal vascular diseases. Currently, accurate quantification of topographical distribution of CNP on ultrawide field fluorescein angiography (UWF-FA) by retinal experts is subjective and lack standardisation. A U-net style network was trained to extract a dense segmentation of CNP from a newly created dataset of 75 UWF-FA images. A subset of 20 images was also segmented by a second expert grader for inter-grader reliability evaluation. Further, a circular grid centred on the FAZ was used to provide standardised CNP distribution analysis. The model for dense segmentation was five-fold cross-validated achieving area under the receiving operating characteristic of 0.82 (0.03) and area under precision-recall curve 0.73 (0.05). Inter-grader assessment on the 20 image subset achieves: precision 59.34 (10.92), recall 76.99 (12.5), and dice similarity coefficient (DSC) 65.51 (4.91), and the centred operating point of the automated model reached: precision 64.41 (13.66), recall 70.02 (16.2), and DSC 66.09 (13.32). Agreement of CNP grid assessment reached: Kappa 0.55 (0.03), perfused intraclass correlation (ICC) 0.89 (0.77, 0.93), non-perfused ICC 0.86 (0.73, 0.92), inter-grader agreement of CNP grid assessment values are Kappa 0.43 (0.03), perfused ICC 0.70 (0.48, 0.83), non-perfused ICC 0.71 (0.48, 0.83). Automated dense segmentation of CNP in UWF-FA images achieves performance levels comparable to inter-grader agreement values. A grid placed on the deep learning-based automatic segmentation of CNP generates a reliable and quantifiable method of measurement of CNP, to overcome the subjectivity of human graders.
format Online
Article
Text
id pubmed-7464218
institution National Center for Biotechnology Information
language English
publishDate 2020
publisher MDPI
record_format MEDLINE/PubMed
spelling pubmed-74642182020-09-04 Deep Learning-Based Segmentation and Quantification of Retinal Capillary Non-Perfusion on Ultra-Wide-Field Retinal Fluorescein Angiography Nunez do Rio, Joan M. Sen, Piyali Rasheed, Rajna Bagchi, Akanksha Nicholson, Luke Dubis, Adam M. Bergeles, Christos Sivaprasad, Sobha J Clin Med Article Reliable outcome measures are required for clinical trials investigating novel agents for preventing progression of capillary non-perfusion (CNP) in retinal vascular diseases. Currently, accurate quantification of topographical distribution of CNP on ultrawide field fluorescein angiography (UWF-FA) by retinal experts is subjective and lack standardisation. A U-net style network was trained to extract a dense segmentation of CNP from a newly created dataset of 75 UWF-FA images. A subset of 20 images was also segmented by a second expert grader for inter-grader reliability evaluation. Further, a circular grid centred on the FAZ was used to provide standardised CNP distribution analysis. The model for dense segmentation was five-fold cross-validated achieving area under the receiving operating characteristic of 0.82 (0.03) and area under precision-recall curve 0.73 (0.05). Inter-grader assessment on the 20 image subset achieves: precision 59.34 (10.92), recall 76.99 (12.5), and dice similarity coefficient (DSC) 65.51 (4.91), and the centred operating point of the automated model reached: precision 64.41 (13.66), recall 70.02 (16.2), and DSC 66.09 (13.32). Agreement of CNP grid assessment reached: Kappa 0.55 (0.03), perfused intraclass correlation (ICC) 0.89 (0.77, 0.93), non-perfused ICC 0.86 (0.73, 0.92), inter-grader agreement of CNP grid assessment values are Kappa 0.43 (0.03), perfused ICC 0.70 (0.48, 0.83), non-perfused ICC 0.71 (0.48, 0.83). Automated dense segmentation of CNP in UWF-FA images achieves performance levels comparable to inter-grader agreement values. A grid placed on the deep learning-based automatic segmentation of CNP generates a reliable and quantifiable method of measurement of CNP, to overcome the subjectivity of human graders. MDPI 2020-08-06 /pmc/articles/PMC7464218/ /pubmed/32781564 http://dx.doi.org/10.3390/jcm9082537 Text en © 2020 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Nunez do Rio, Joan M.
Sen, Piyali
Rasheed, Rajna
Bagchi, Akanksha
Nicholson, Luke
Dubis, Adam M.
Bergeles, Christos
Sivaprasad, Sobha
Deep Learning-Based Segmentation and Quantification of Retinal Capillary Non-Perfusion on Ultra-Wide-Field Retinal Fluorescein Angiography
title Deep Learning-Based Segmentation and Quantification of Retinal Capillary Non-Perfusion on Ultra-Wide-Field Retinal Fluorescein Angiography
title_full Deep Learning-Based Segmentation and Quantification of Retinal Capillary Non-Perfusion on Ultra-Wide-Field Retinal Fluorescein Angiography
title_fullStr Deep Learning-Based Segmentation and Quantification of Retinal Capillary Non-Perfusion on Ultra-Wide-Field Retinal Fluorescein Angiography
title_full_unstemmed Deep Learning-Based Segmentation and Quantification of Retinal Capillary Non-Perfusion on Ultra-Wide-Field Retinal Fluorescein Angiography
title_short Deep Learning-Based Segmentation and Quantification of Retinal Capillary Non-Perfusion on Ultra-Wide-Field Retinal Fluorescein Angiography
title_sort deep learning-based segmentation and quantification of retinal capillary non-perfusion on ultra-wide-field retinal fluorescein angiography
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7464218/
https://www.ncbi.nlm.nih.gov/pubmed/32781564
http://dx.doi.org/10.3390/jcm9082537
work_keys_str_mv AT nunezdoriojoanm deeplearningbasedsegmentationandquantificationofretinalcapillarynonperfusiononultrawidefieldretinalfluoresceinangiography
AT senpiyali deeplearningbasedsegmentationandquantificationofretinalcapillarynonperfusiononultrawidefieldretinalfluoresceinangiography
AT rasheedrajna deeplearningbasedsegmentationandquantificationofretinalcapillarynonperfusiononultrawidefieldretinalfluoresceinangiography
AT bagchiakanksha deeplearningbasedsegmentationandquantificationofretinalcapillarynonperfusiononultrawidefieldretinalfluoresceinangiography
AT nicholsonluke deeplearningbasedsegmentationandquantificationofretinalcapillarynonperfusiononultrawidefieldretinalfluoresceinangiography
AT dubisadamm deeplearningbasedsegmentationandquantificationofretinalcapillarynonperfusiononultrawidefieldretinalfluoresceinangiography
AT bergeleschristos deeplearningbasedsegmentationandquantificationofretinalcapillarynonperfusiononultrawidefieldretinalfluoresceinangiography
AT sivaprasadsobha deeplearningbasedsegmentationandquantificationofretinalcapillarynonperfusiononultrawidefieldretinalfluoresceinangiography