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Description of Komagataeibacter melaceti sp. nov. and Komagataeibacter melomenusus sp. nov. Isolated from Apple Cider Vinegar

Two novel strains AV382 and AV436 were isolated from a submerged industrial bioreactor for production of apple cider vinegar in Kopivnik (Slovenia). Both strains showed very high (≥98.2%) 16S rRNA gene sequence similarities with Komagataeibacter species, but lower 16S–23S rRNA gene internal transcri...

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Autores principales: Marič, Leon, Cleenwerck, Ilse, Accetto, Tomaž, Vandamme, Peter, Trček, Janja
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7465234/
https://www.ncbi.nlm.nih.gov/pubmed/32756518
http://dx.doi.org/10.3390/microorganisms8081178
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author Marič, Leon
Cleenwerck, Ilse
Accetto, Tomaž
Vandamme, Peter
Trček, Janja
author_facet Marič, Leon
Cleenwerck, Ilse
Accetto, Tomaž
Vandamme, Peter
Trček, Janja
author_sort Marič, Leon
collection PubMed
description Two novel strains AV382 and AV436 were isolated from a submerged industrial bioreactor for production of apple cider vinegar in Kopivnik (Slovenia). Both strains showed very high (≥98.2%) 16S rRNA gene sequence similarities with Komagataeibacter species, but lower 16S–23S rRNA gene internal transcribed spacer (ITS). The highest similarity of the 16S–23S rRNA gene ITS of AV382 was to Komagataeibacter kakiaceti LMG 26206(T) (91.6%), of AV436 to Komagataeibacter xylinus LMG 1515(T) (93.9%). The analysis of genome sequences confirmed that AV382 is the most closely related to K. kakiaceti (ANIb 88.2%) and AV436 to K. xylinus (ANIb 91.6%). Genome to genome distance calculations exhibit for both strains ≤47.3% similarity to all type strains of the genus Komagataeibacter. The strain AV382 can be differentiated from its closest relatives K. kakiaceti and Komagataeibacter saccharivorans by its ability to form 2-keto and 5-keto-D-gluconic acids from glucose, incapability to grow in the presence of 30% glucose, formation of C(19:0) cyclo ω8c fatty acid and tolerance of up to 5% acetic acid in the presence of ethanol. The strain AV436 can be differentiated from its closest relatives K. xylinus, Komagataeibacter sucrofermentans, and Komagataeibacter nataicola by its ability to form 5-keto-D-gluconic acid, growth on 1-propanol, efficient synthesis of cellulose, and tolerance to up to 5% acetic acid in the presence ethanol. The major fatty acid of both strains is C(18:1) ω7c. Based on a combination of phenotypic, chemotaxonomic and phylogenetic features, the strains AV382(T) and AV436(T) represent novel species of the genus Komagataeibacter, for which the names Komagataeibacter melaceti sp. nov. and Komagataeibacter melomenusus are proposed, respectively. The type strain of Komagataeibacter melaceti is AV382(T) (= ZIM B1054(T) = LMG 31303(T) = CCM 8958(T)) and of Komagataeibacter melomenusus AV436(T) (= ZIM B1056(T) = LMG 31304(T) = CCM 8959(T)).
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spelling pubmed-74652342020-09-04 Description of Komagataeibacter melaceti sp. nov. and Komagataeibacter melomenusus sp. nov. Isolated from Apple Cider Vinegar Marič, Leon Cleenwerck, Ilse Accetto, Tomaž Vandamme, Peter Trček, Janja Microorganisms Article Two novel strains AV382 and AV436 were isolated from a submerged industrial bioreactor for production of apple cider vinegar in Kopivnik (Slovenia). Both strains showed very high (≥98.2%) 16S rRNA gene sequence similarities with Komagataeibacter species, but lower 16S–23S rRNA gene internal transcribed spacer (ITS). The highest similarity of the 16S–23S rRNA gene ITS of AV382 was to Komagataeibacter kakiaceti LMG 26206(T) (91.6%), of AV436 to Komagataeibacter xylinus LMG 1515(T) (93.9%). The analysis of genome sequences confirmed that AV382 is the most closely related to K. kakiaceti (ANIb 88.2%) and AV436 to K. xylinus (ANIb 91.6%). Genome to genome distance calculations exhibit for both strains ≤47.3% similarity to all type strains of the genus Komagataeibacter. The strain AV382 can be differentiated from its closest relatives K. kakiaceti and Komagataeibacter saccharivorans by its ability to form 2-keto and 5-keto-D-gluconic acids from glucose, incapability to grow in the presence of 30% glucose, formation of C(19:0) cyclo ω8c fatty acid and tolerance of up to 5% acetic acid in the presence of ethanol. The strain AV436 can be differentiated from its closest relatives K. xylinus, Komagataeibacter sucrofermentans, and Komagataeibacter nataicola by its ability to form 5-keto-D-gluconic acid, growth on 1-propanol, efficient synthesis of cellulose, and tolerance to up to 5% acetic acid in the presence ethanol. The major fatty acid of both strains is C(18:1) ω7c. Based on a combination of phenotypic, chemotaxonomic and phylogenetic features, the strains AV382(T) and AV436(T) represent novel species of the genus Komagataeibacter, for which the names Komagataeibacter melaceti sp. nov. and Komagataeibacter melomenusus are proposed, respectively. The type strain of Komagataeibacter melaceti is AV382(T) (= ZIM B1054(T) = LMG 31303(T) = CCM 8958(T)) and of Komagataeibacter melomenusus AV436(T) (= ZIM B1056(T) = LMG 31304(T) = CCM 8959(T)). MDPI 2020-08-03 /pmc/articles/PMC7465234/ /pubmed/32756518 http://dx.doi.org/10.3390/microorganisms8081178 Text en © 2020 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Marič, Leon
Cleenwerck, Ilse
Accetto, Tomaž
Vandamme, Peter
Trček, Janja
Description of Komagataeibacter melaceti sp. nov. and Komagataeibacter melomenusus sp. nov. Isolated from Apple Cider Vinegar
title Description of Komagataeibacter melaceti sp. nov. and Komagataeibacter melomenusus sp. nov. Isolated from Apple Cider Vinegar
title_full Description of Komagataeibacter melaceti sp. nov. and Komagataeibacter melomenusus sp. nov. Isolated from Apple Cider Vinegar
title_fullStr Description of Komagataeibacter melaceti sp. nov. and Komagataeibacter melomenusus sp. nov. Isolated from Apple Cider Vinegar
title_full_unstemmed Description of Komagataeibacter melaceti sp. nov. and Komagataeibacter melomenusus sp. nov. Isolated from Apple Cider Vinegar
title_short Description of Komagataeibacter melaceti sp. nov. and Komagataeibacter melomenusus sp. nov. Isolated from Apple Cider Vinegar
title_sort description of komagataeibacter melaceti sp. nov. and komagataeibacter melomenusus sp. nov. isolated from apple cider vinegar
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7465234/
https://www.ncbi.nlm.nih.gov/pubmed/32756518
http://dx.doi.org/10.3390/microorganisms8081178
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