Cargando…

DNC4mC-Deep: Identification and Analysis of DNA N4-Methylcytosine Sites Based on Different Encoding Schemes By Using Deep Learning

N4-methylcytosine as one kind of modification of DNA has a critical role which alters genetic performance such as protein interactions, conformation, stability in DNA as well as the regulation of gene expression same cell developmental and genomic imprinting. Some different 4mC site identifiers have...

Descripción completa

Detalles Bibliográficos
Autores principales:	Wahab, Abdul, Mahmoudi, Omid, Kim, Jeehong, Chong, Kil To
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	MDPI 2020
Materias:	Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7465362/ https://www.ncbi.nlm.nih.gov/pubmed/32707969 http://dx.doi.org/10.3390/cells9081756

Ejemplares similares

i4mC-Deep: An Intelligent Predictor of N4-Methylcytosine Sites Using a Deep Learning Approach with Chemical Properties
por: Alam, Waleed, et al.
Publicado: (2021)

i4mC-Mouse: Improved identification of DNA N4-methylcytosine sites in the mouse genome using multiple encoding schemes
por: Hasan, Md. Mehedi, et al.
Publicado: (2020)

DNA sequences performs as natural language processing by exploiting deep learning algorithm for the identification of N4-methylcytosine
por: Wahab, Abdul, et al.
Publicado: (2021)

DCNN-4mC: Densely connected neural network based N4-methylcytosine site prediction in multiple species
por: Rehman, Mobeen Ur, et al.
Publicado: (2021)

iMethyl-Deep: N6 Methyladenosine Identification of Yeast Genome with Automatic Feature Extraction Technique by Using Deep Learning Algorithm
por: Mahmoudi, Omid, et al.
Publicado: (2020)

Identifying DNA N4-methylcytosine sites in the rosaceae genome with a deep learning model relying on distributed feature representation()
por: Khanal, Jhabindra, et al.
Publicado: (2021)

iRNAm5C-PseDNC: identifying RNA 5-methylcytosine sites by incorporating physical-chemical properties into pseudo dinucleotide composition
por: Qiu, Wang-Ren, et al.
Publicado: (2017)

A Deep Neural Network for Identifying DNA N4-Methylcytosine Sites
por: Zeng, Feng, et al.
Publicado: (2020)

Systematic Analysis and Accurate Identification of DNA N4-Methylcytosine Sites by Deep Learning
por: Yu, Lezheng, et al.
Publicado: (2022)

i4mC-EL: Identifying DNA N4-Methylcytosine Sites in the Mouse Genome Using Ensemble Learning
por: Li, Yanjuan, et al.
Publicado: (2021)

Hyb4mC: a hybrid DNA2vec-based model for DNA N4-methylcytosine sites prediction
por: Liang, Ying, et al.
Publicado: (2022)

Comparative evaluation and analysis of DNA N4-methylcytosine methylation sites using deep learning
por: Ju, Hong, et al.
Publicado: (2023)

Caenorhabditis elegans ortholog of the p24/p22 subunit, DNC-3, is essential for the formation of the dynactin complex by bridging DNC-1/p150(Glued) and DNC-2/dynamitin
por: Terasawa, Masahiro, et al.
Publicado: (2010)

4mCPred-CNN—Prediction of DNA N4-Methylcytosine in the Mouse Genome Using a Convolutional Neural Network
por: Abbas, Zeeshan, et al.
Publicado: (2021)

Base-resolution detection of N(4)-methylcytosine in genomic DNA using 4mC-Tet-assisted-bisulfite- sequencing
por: Yu, Miao, et al.
Publicado: (2015)

iSS-PseDNC: Identifying Splicing Sites Using Pseudo Dinucleotide Composition
por: Chen, Wei, et al.
Publicado: (2014)

Deep-4mCGP: A Deep Learning Approach to Predict 4mC Sites in Geobacter pickeringii by Using Correlation-Based Feature Selection Technique
por: Zulfiqar, Hasan, et al.
Publicado: (2022)

i4mC-GRU: Identifying DNA N(4)-Methylcytosine sites in mouse genomes using bidirectional gated recurrent unit and sequence-embedded features
por: Nguyen-Vo, Thanh-Hoang, et al.
Publicado: (2023)

BrainSeg-Net: Brain Tumor MR Image Segmentation via Enhanced Encoder–Decoder Network
por: Rehman, Mobeen Ur, et al.
Publicado: (2021)

DRSN4mCPred: accurately predicting sites of DNA N4-methylcytosine using deep residual shrinkage network for diagnosis and treatment of gastrointestinal cancer in the precision medicine era
por: Yu, Xia, et al.
Publicado: (2023)

4mCpred-EL: An Ensemble Learning Framework for Identification of DNA N(4)-Methylcytosine Sites in the Mouse Genome
por: Manavalan, Balachandran, et al.
Publicado: (2019)

The deficiency of 5-methylcytosine (5mC) and its ramification in the occurrence and prognosis of colon cancer
por: Yan, Xin-Xin, et al.
Publicado: (2023)

iRSpot-PseDNC: identify recombination spots with pseudo dinucleotide composition
por: Chen, Wei, et al.
Publicado: (2013)

iPromoter-5mC: A Novel Fusion Decision Predictor for the Identification of 5-Methylcytosine Sites in Genome-Wide DNA Promoters
por: Zhang, Lei, et al.
Publicado: (2020)

Determination and Identification of Nicarbazin, Measured as 4,4′-Dinitrocarbanilide (DNC), in Chicken Tissues by Liquid Chromatography With Tandem Mass Spectrometry: Final Action 2013.07
por: Brunelle, Sharon L, et al.
Publicado: (2022)

Developing a Multi-Layer Deep Learning Based Predictive Model to Identify DNA N4-Methylcytosine Modifications
por: Zeng, Rao, et al.
Publicado: (2020)

4mCPred-MTL: Accurate Identification of DNA 4mC Sites in Multiple Species Using Multi-Task Deep Learning Based on Multi-Head Attention Mechanism
por: Zeng, Rao, et al.
Publicado: (2021)

dnc-1/dynactin 1 Knockdown Disrupts Transport of Autophagosomes and Induces Motor Neuron Degeneration
por: Ikenaka, Kensuke, et al.
Publicado: (2013)

Empirical Comparison and Analysis of Web-Based DNA N(4)-Methylcytosine Site Prediction Tools
por: Manavalan, Balachandran, et al.
Publicado: (2020)

A Grid Search-Based Multilayer Dynamic Ensemble System to Identify DNA N4—Methylcytosine Using Deep Learning Approach
por: Halder, Rajib Kumar, et al.
Publicado: (2023)

BiLSTM-5mC: A Bidirectional Long Short-Term Memory-Based Approach for Predicting 5-Methylcytosine Sites in Genome-Wide DNA Promoters
por: Cheng, Xin, et al.
Publicado: (2021)

Preparation of DNC Solid Dispersion by a Mechanochemical Method with Glycyrrhizic Acid and Polyvinylpyrrolidone to Enhance Bioavailability and Activity
por: Lu, Min, et al.
Publicado: (2022)

Analysis of Bending Degree of Basilar Artery Using Image Processing
por: Kim, Jeehong, et al.
Publicado: (2022)

Bacterial N4-methylcytosine as an epigenetic mark in eukaryotic DNA
por: Rodriguez, Fernando, et al.
Publicado: (2022)

DncV Synthesizes Cyclic GMP-AMP and Regulates Biofilm Formation and Motility in Escherichia coli ECOR31
por: Li, Fengyang, et al.
Publicado: (2019)

Crystal structure and functional implications of cyclic di-pyrimidine-synthesizing cGAS/DncV-like nucleotidyltransferases
por: Yang, Chia-Shin, et al.
Publicado: (2023)

TS-m6A-DL: Tissue-specific identification of N6-methyladenosine sites using a universal deep learning model
por: Abbas, Zeeshan, et al.
Publicado: (2021)

A determination of $m_c(m_c)$ from HERA data using a matched heavy-flavor scheme
por: Bertone, Valerio, et al.
Publicado: (2016)

Accurate prediction of DNA N(4)-methylcytosine sites via boost-learning various types of sequence features
por: Zhao, Zhixun, et al.
Publicado: (2020)

PUResNet: prediction of protein-ligand binding sites using deep residual neural network
por: Kandel, Jeevan, et al.
Publicado: (2021)

Cannot write session to /tmp/vufind_sessions/sess_vbu7f4g6eb9js7fkrhsuc5vdsb