Cargando…

Metabolic Modelling as a Framework for Metabolomics Data Integration and Analysis

Metabolic networks are regulated to ensure the dynamic adaptation of biochemical reaction fluxes to maintain cell homeostasis and optimal metabolic fitness in response to endogenous and exogenous perturbations. To this end, metabolism is tightly controlled by dynamic and intricate regulatory mechani...

Descripción completa

Detalles Bibliográficos
Autores principales:	Volkova, Svetlana, Matos, Marta R. A., Mattanovich, Matthias, Marín de Mas, Igor
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	MDPI 2020
Materias:	Review
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7465778/ https://www.ncbi.nlm.nih.gov/pubmed/32722118 http://dx.doi.org/10.3390/metabo10080303

Ejemplares similares

Metabolomics integrated elementary flux mode analysis in large metabolic networks
por: Gerstl, Matthias P., et al.
Publicado: (2015)

GRASP: a computational platform for building kinetic models of cellular metabolism
por: Matos, Marta R A, et al.
Publicado: (2022)

Integration of metabolomics data into metabolic networks
por: Töpfer, Nadine, et al.
Publicado: (2015)

Integrative Analysis of Metabolomics and Transcriptomics Data: A Unified Model Framework to Identify Underlying System Pathways
por: Brink-Jensen, Kasper, et al.
Publicado: (2013)

Genomic, Proteomic, and Metabolomic Data Integration Strategies
por: Wanichthanarak, Kwanjeera, et al.
Publicado: (2015)

Integration of metabolome data with metabolic networks reveals reporter reactions
por: Çakir, Tunahan, et al.
Publicado: (2006)

Stoichiometric gene-to-reaction associations enhance model-driven analysis performance: Metabolic response to chronic exposure to Aldrin in prostate cancer
por: Marín de Mas, Igor, et al.
Publicado: (2019)

An explorative metabolomic analysis of the endothelium in pulmonary hypertension
por: Carlsen, J., et al.
Publicado: (2022)

Integrative omics analysis. A study based on Plasmodium falciparum mRNA and protein data
por: Tomescu, Oana A, et al.
Publicado: (2014)

COordination of Standards in MetabOlomicS (COSMOS): facilitating integrated metabolomics data access
por: Salek, Reza M., et al.
Publicado: (2015)

Approaches to Integrating Metabolomics and Multi-Omics Data: A Primer
por: Jendoubi, Takoua
Publicado: (2021)

Epigenomic and Metabolomic Integration Reveals Dynamic Metabolic Regulation in Bladder Cancer
por: Loras, Alba, et al.
Publicado: (2021)

Metabolomics and modelling approaches for systems metabolic engineering
por: Khanijou, Jasmeet Kaur, et al.
Publicado: (2022)

Computational Approaches for Integrative Analysis of the Metabolome and Microbiome
por: Chong, Jasmine, et al.
Publicado: (2017)

Metabolic flux analysis for metabolome data validation of naturally xylose-fermenting yeasts
por: Veras, Henrique C. T., et al.
Publicado: (2019)

An integrated genomic and metabolomic framework for cell wall biology in rice
por: Guo, Kai, et al.
Publicado: (2014)

Model-driven discovery of long-chain fatty acid metabolic reprogramming in heterogeneous prostate cancer cells
por: Marín de Mas, Igor, et al.
Publicado: (2018)

Metabolic model integration of the bibliome, genome, metabolome and reactome of Aspergillus niger
por: Andersen, Mikael Rørdam, et al.
Publicado: (2008)

struct: an R/Bioconductor-based framework for standardized metabolomics data analysis and beyond
por: Lloyd, Gavin Rhys, et al.
Publicado: (2020)

HepatoDyn: A Dynamic Model of Hepatocyte Metabolism That Integrates (13)C Isotopomer Data
por: Foguet, Carles, et al.
Publicado: (2016)

Applications of Metabolomics in Calcium Metabolism Disorders in Humans
por: Podgórska, Beata, et al.
Publicado: (2022)

Compartmentation of glycogen metabolism revealed from (13)C isotopologue distributions
por: Marin de Mas, Igor, et al.
Publicado: (2011)

DATA MODEL INTEGRATION: THE GLOBAL EPIDEMIC AND MOBILITY FRAMEWORK
por: Pastore y Piontti, Ana, et al.
Publicado: (2018)

Metabolomic mechanisms of gypenoside against liver fibrosis in rats: An integrative analysis of proteomics and metabolomics data
por: Song, Ya-Nan, et al.
Publicado: (2017)

A Protocol for the Automatic Construction of Highly Curated Genome-Scale Models of Human Metabolism
por: Marin de Mas, Igor, et al.
Publicado: (2023)

Investigation into potential mechanisms of metabolic syndrome by integrative analysis of metabolomics and proteomics
por: Chen, Meimei, et al.
Publicado: (2022)

CORAL: A framework for rigorous self-validated data modeling and integrative, reproducible data analysis
por: Novichkov, Pavel S, et al.
Publicado: (2022)

Error Analysis and Propagation in Metabolomics Data Analysis
por: Moseley, Hunter N.B.
Publicado: (2013)

Integration of Metabolomic and Proteomic Phenotypes: Analysis of Data Covariance Dissects Starch and RFO Metabolism from Low and High Temperature Compensation Response in Arabidopsis Thaliana
por: Wienkoop, Stefanie, et al.
Publicado: (2008)

COVRECON: automated integration of genome- and metabolome-scale network reconstruction and data-driven inverse modeling of metabolic interaction networks
por: Li, Jiahang, et al.
Publicado: (2023)

Integrating quantitative proteomics and metabolomics with a genome-scale metabolic network model
por: Yizhak, Keren, et al.
Publicado: (2010)

Methods for integration of transcriptomic data in genome-scale metabolic models
por: Kim, Min Kyung, et al.
Publicado: (2014)

BZINB model-based pathway analysis and module identification facilitates integration of microbiome and metabolome data
por: Lin, Bridget, et al.
Publicado: (2023)

BZINB Model-Based Pathway Analysis and Module Identification Facilitates Integration of Microbiome and Metabolome Data
por: Lin, Bridget M., et al.
Publicado: (2023)

Metabolomics, Standards, and Metabolic Modeling for Synthetic Biology in Plants
por: Hill, Camilla Beate, et al.
Publicado: (2015)

From correlation to causation: analysis of metabolomics data using systems biology approaches
por: Rosato, Antonio, et al.
Publicado: (2018)

Integration of relative metabolomics and transcriptomics time-course data in a metabolic model pinpoints effects of ribosome biogenesis defects on Arabidopsis thaliana metabolism
por: Pries, Christopher, et al.
Publicado: (2021)

A Multi-Level Systems Biology Analysis of Aldrin’s Metabolic Effects on Prostate Cancer Cells
por: Bedia, Carmen, et al.
Publicado: (2023)

Integration of Metabolomic and Other Omics Data in Population-Based Study Designs: An Epidemiological Perspective
por: Chu, Su H., et al.
Publicado: (2019)

Integration of the Microbiome, Metabolome and Transcriptomics Data Identified Novel Metabolic Pathway Regulation in Colorectal Cancer
por: Bisht, Vartika, et al.
Publicado: (2021)

Cannot write session to /tmp/vufind_sessions/sess_1g02b2mu5ealma9v6hjt95btbu