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The Genetic Code Kit: An Open-Source Cell-Free Platform for Biochemical and Biotechnology Education

Teaching the processes of transcription and translation is challenging due to the intangibility of these concepts and a lack of instructional, laboratory-based, active learning modules. Harnessing the genetic code in vitro with cell-free protein synthesis (CFPS) provides an open platform that allows...

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Autores principales: Williams, Layne C., Gregorio, Nicole E., So, Byungcheol, Kao, Wesley Y., Kiste, Alan L., Patel, Pratish A., Watts, Katharine R., Oza, Javin P.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7466673/
https://www.ncbi.nlm.nih.gov/pubmed/32974303
http://dx.doi.org/10.3389/fbioe.2020.00941
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author Williams, Layne C.
Gregorio, Nicole E.
So, Byungcheol
Kao, Wesley Y.
Kiste, Alan L.
Patel, Pratish A.
Watts, Katharine R.
Oza, Javin P.
author_facet Williams, Layne C.
Gregorio, Nicole E.
So, Byungcheol
Kao, Wesley Y.
Kiste, Alan L.
Patel, Pratish A.
Watts, Katharine R.
Oza, Javin P.
author_sort Williams, Layne C.
collection PubMed
description Teaching the processes of transcription and translation is challenging due to the intangibility of these concepts and a lack of instructional, laboratory-based, active learning modules. Harnessing the genetic code in vitro with cell-free protein synthesis (CFPS) provides an open platform that allows for the direct manipulation of reaction conditions and biological machinery to enable inquiry-based learning. Here, we report our efforts to transform the research-based CFPS biotechnology into a hands-on module called the “Genetic Code Kit” for implementation into teaching laboratories. The Genetic Code Kit includes all reagents necessary for CFPS, as well as a laboratory manual, student worksheet, and augmented reality activity. This module allows students to actively explore transcription and translation while gaining exposure to an emerging research technology. In our testing of this module, undergraduate students who used the Genetic Code Kit in a teaching laboratory showed significant score increases on transcription and translation questions in a post-lab questionnaire compared with students who did not participate in the activity. Students also demonstrated an increase in self-reported confidence in laboratory methods and comfort with CFPS, indicating that this module helps prepare students for careers in laboratory research. Importantly, the Genetic Code Kit can accommodate a variety of learning objectives beyond transcription and translation and enables hypothesis-driven science. This opens the possibility of developing Course-Based Undergraduate Research Experiences (CUREs) based on the Genetic Code Kit, as well as supporting next-generation science standards in 8–12th grade science courses.
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spelling pubmed-74666732020-09-23 The Genetic Code Kit: An Open-Source Cell-Free Platform for Biochemical and Biotechnology Education Williams, Layne C. Gregorio, Nicole E. So, Byungcheol Kao, Wesley Y. Kiste, Alan L. Patel, Pratish A. Watts, Katharine R. Oza, Javin P. Front Bioeng Biotechnol Bioengineering and Biotechnology Teaching the processes of transcription and translation is challenging due to the intangibility of these concepts and a lack of instructional, laboratory-based, active learning modules. Harnessing the genetic code in vitro with cell-free protein synthesis (CFPS) provides an open platform that allows for the direct manipulation of reaction conditions and biological machinery to enable inquiry-based learning. Here, we report our efforts to transform the research-based CFPS biotechnology into a hands-on module called the “Genetic Code Kit” for implementation into teaching laboratories. The Genetic Code Kit includes all reagents necessary for CFPS, as well as a laboratory manual, student worksheet, and augmented reality activity. This module allows students to actively explore transcription and translation while gaining exposure to an emerging research technology. In our testing of this module, undergraduate students who used the Genetic Code Kit in a teaching laboratory showed significant score increases on transcription and translation questions in a post-lab questionnaire compared with students who did not participate in the activity. Students also demonstrated an increase in self-reported confidence in laboratory methods and comfort with CFPS, indicating that this module helps prepare students for careers in laboratory research. Importantly, the Genetic Code Kit can accommodate a variety of learning objectives beyond transcription and translation and enables hypothesis-driven science. This opens the possibility of developing Course-Based Undergraduate Research Experiences (CUREs) based on the Genetic Code Kit, as well as supporting next-generation science standards in 8–12th grade science courses. Frontiers Media S.A. 2020-08-19 /pmc/articles/PMC7466673/ /pubmed/32974303 http://dx.doi.org/10.3389/fbioe.2020.00941 Text en Copyright © 2020 Williams, Gregorio, So, Kao, Kiste, Patel, Watts and Oza. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Bioengineering and Biotechnology
Williams, Layne C.
Gregorio, Nicole E.
So, Byungcheol
Kao, Wesley Y.
Kiste, Alan L.
Patel, Pratish A.
Watts, Katharine R.
Oza, Javin P.
The Genetic Code Kit: An Open-Source Cell-Free Platform for Biochemical and Biotechnology Education
title The Genetic Code Kit: An Open-Source Cell-Free Platform for Biochemical and Biotechnology Education
title_full The Genetic Code Kit: An Open-Source Cell-Free Platform for Biochemical and Biotechnology Education
title_fullStr The Genetic Code Kit: An Open-Source Cell-Free Platform for Biochemical and Biotechnology Education
title_full_unstemmed The Genetic Code Kit: An Open-Source Cell-Free Platform for Biochemical and Biotechnology Education
title_short The Genetic Code Kit: An Open-Source Cell-Free Platform for Biochemical and Biotechnology Education
title_sort genetic code kit: an open-source cell-free platform for biochemical and biotechnology education
topic Bioengineering and Biotechnology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7466673/
https://www.ncbi.nlm.nih.gov/pubmed/32974303
http://dx.doi.org/10.3389/fbioe.2020.00941
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