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Genome-Wide Association Analysis Identified ANXA1 Associated with Shoulder Impingement Syndrome in UK Biobank Samples
Shoulder impingement syndrome (SIS) is a common shoulder disorder with unclear genetic mechanism. In this study, Genome-wide Association Study (GWAS) was conducted to identify the candidate loci associated with SIS by using the UK Biobank samples (including 3,626 SIS patients and 3,626 control subje...
Autores principales: | , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Genetics Society of America
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7466970/ https://www.ncbi.nlm.nih.gov/pubmed/32690583 http://dx.doi.org/10.1534/g3.120.401257 |
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author | Cheng, Bolun Ning, Yujie Liang, Chujun Li, Ping Liu, Li Cheng, Shiqiang Ma, Mei Zhang, Lu Qi, Xin Wen, Yan Zhang, Feng |
author_facet | Cheng, Bolun Ning, Yujie Liang, Chujun Li, Ping Liu, Li Cheng, Shiqiang Ma, Mei Zhang, Lu Qi, Xin Wen, Yan Zhang, Feng |
author_sort | Cheng, Bolun |
collection | PubMed |
description | Shoulder impingement syndrome (SIS) is a common shoulder disorder with unclear genetic mechanism. In this study, Genome-wide Association Study (GWAS) was conducted to identify the candidate loci associated with SIS by using the UK Biobank samples (including 3,626 SIS patients and 3,626 control subjects). Based on the GWAS results, gene set enrichment analysis was further performed to detect the candidate gene ontology and pathways associated with SIS. We identified multiple risk loci associated with SIS, such as rs750968 (P = 4.82 × 10(−8)), rs754832 (P = 4.83 × 10(−8)) and rs1873119 (P = 6.39 × 10(−8)) of ANXA1 gene. Some candidate pathways have been identified related to SIS, including those linked to infection response and hypoxia, “ZHOU_INFLAMMATORY_RESPONSE_FIMA_DN” (P = 0.012) and “MANALO_HYPOXIA_UP” (P = 5.00 × 10(−5)). Our results provide novel clues for understanding the genetic mechanism of SIS. |
format | Online Article Text |
id | pubmed-7466970 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Genetics Society of America |
record_format | MEDLINE/PubMed |
spelling | pubmed-74669702020-09-14 Genome-Wide Association Analysis Identified ANXA1 Associated with Shoulder Impingement Syndrome in UK Biobank Samples Cheng, Bolun Ning, Yujie Liang, Chujun Li, Ping Liu, Li Cheng, Shiqiang Ma, Mei Zhang, Lu Qi, Xin Wen, Yan Zhang, Feng G3 (Bethesda) Investigations Shoulder impingement syndrome (SIS) is a common shoulder disorder with unclear genetic mechanism. In this study, Genome-wide Association Study (GWAS) was conducted to identify the candidate loci associated with SIS by using the UK Biobank samples (including 3,626 SIS patients and 3,626 control subjects). Based on the GWAS results, gene set enrichment analysis was further performed to detect the candidate gene ontology and pathways associated with SIS. We identified multiple risk loci associated with SIS, such as rs750968 (P = 4.82 × 10(−8)), rs754832 (P = 4.83 × 10(−8)) and rs1873119 (P = 6.39 × 10(−8)) of ANXA1 gene. Some candidate pathways have been identified related to SIS, including those linked to infection response and hypoxia, “ZHOU_INFLAMMATORY_RESPONSE_FIMA_DN” (P = 0.012) and “MANALO_HYPOXIA_UP” (P = 5.00 × 10(−5)). Our results provide novel clues for understanding the genetic mechanism of SIS. Genetics Society of America 2020-07-20 /pmc/articles/PMC7466970/ /pubmed/32690583 http://dx.doi.org/10.1534/g3.120.401257 Text en Copyright © 2020 Cheng et al. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Investigations Cheng, Bolun Ning, Yujie Liang, Chujun Li, Ping Liu, Li Cheng, Shiqiang Ma, Mei Zhang, Lu Qi, Xin Wen, Yan Zhang, Feng Genome-Wide Association Analysis Identified ANXA1 Associated with Shoulder Impingement Syndrome in UK Biobank Samples |
title | Genome-Wide Association Analysis Identified ANXA1 Associated with Shoulder Impingement Syndrome in UK Biobank Samples |
title_full | Genome-Wide Association Analysis Identified ANXA1 Associated with Shoulder Impingement Syndrome in UK Biobank Samples |
title_fullStr | Genome-Wide Association Analysis Identified ANXA1 Associated with Shoulder Impingement Syndrome in UK Biobank Samples |
title_full_unstemmed | Genome-Wide Association Analysis Identified ANXA1 Associated with Shoulder Impingement Syndrome in UK Biobank Samples |
title_short | Genome-Wide Association Analysis Identified ANXA1 Associated with Shoulder Impingement Syndrome in UK Biobank Samples |
title_sort | genome-wide association analysis identified anxa1 associated with shoulder impingement syndrome in uk biobank samples |
topic | Investigations |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7466970/ https://www.ncbi.nlm.nih.gov/pubmed/32690583 http://dx.doi.org/10.1534/g3.120.401257 |
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