Cargando…

Genome-Wide Association Analysis Identified ANXA1 Associated with Shoulder Impingement Syndrome in UK Biobank Samples

Shoulder impingement syndrome (SIS) is a common shoulder disorder with unclear genetic mechanism. In this study, Genome-wide Association Study (GWAS) was conducted to identify the candidate loci associated with SIS by using the UK Biobank samples (including 3,626 SIS patients and 3,626 control subje...

Descripción completa

Detalles Bibliográficos
Autores principales: Cheng, Bolun, Ning, Yujie, Liang, Chujun, Li, Ping, Liu, Li, Cheng, Shiqiang, Ma, Mei, Zhang, Lu, Qi, Xin, Wen, Yan, Zhang, Feng
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Genetics Society of America 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7466970/
https://www.ncbi.nlm.nih.gov/pubmed/32690583
http://dx.doi.org/10.1534/g3.120.401257
_version_ 1783577924531650560
author Cheng, Bolun
Ning, Yujie
Liang, Chujun
Li, Ping
Liu, Li
Cheng, Shiqiang
Ma, Mei
Zhang, Lu
Qi, Xin
Wen, Yan
Zhang, Feng
author_facet Cheng, Bolun
Ning, Yujie
Liang, Chujun
Li, Ping
Liu, Li
Cheng, Shiqiang
Ma, Mei
Zhang, Lu
Qi, Xin
Wen, Yan
Zhang, Feng
author_sort Cheng, Bolun
collection PubMed
description Shoulder impingement syndrome (SIS) is a common shoulder disorder with unclear genetic mechanism. In this study, Genome-wide Association Study (GWAS) was conducted to identify the candidate loci associated with SIS by using the UK Biobank samples (including 3,626 SIS patients and 3,626 control subjects). Based on the GWAS results, gene set enrichment analysis was further performed to detect the candidate gene ontology and pathways associated with SIS. We identified multiple risk loci associated with SIS, such as rs750968 (P = 4.82 × 10(−8)), rs754832 (P = 4.83 × 10(−8)) and rs1873119 (P = 6.39 × 10(−8)) of ANXA1 gene. Some candidate pathways have been identified related to SIS, including those linked to infection response and hypoxia, “ZHOU_INFLAMMATORY_RESPONSE_FIMA_DN” (P = 0.012) and “MANALO_HYPOXIA_UP” (P = 5.00 × 10(−5)). Our results provide novel clues for understanding the genetic mechanism of SIS.
format Online
Article
Text
id pubmed-7466970
institution National Center for Biotechnology Information
language English
publishDate 2020
publisher Genetics Society of America
record_format MEDLINE/PubMed
spelling pubmed-74669702020-09-14 Genome-Wide Association Analysis Identified ANXA1 Associated with Shoulder Impingement Syndrome in UK Biobank Samples Cheng, Bolun Ning, Yujie Liang, Chujun Li, Ping Liu, Li Cheng, Shiqiang Ma, Mei Zhang, Lu Qi, Xin Wen, Yan Zhang, Feng G3 (Bethesda) Investigations Shoulder impingement syndrome (SIS) is a common shoulder disorder with unclear genetic mechanism. In this study, Genome-wide Association Study (GWAS) was conducted to identify the candidate loci associated with SIS by using the UK Biobank samples (including 3,626 SIS patients and 3,626 control subjects). Based on the GWAS results, gene set enrichment analysis was further performed to detect the candidate gene ontology and pathways associated with SIS. We identified multiple risk loci associated with SIS, such as rs750968 (P = 4.82 × 10(−8)), rs754832 (P = 4.83 × 10(−8)) and rs1873119 (P = 6.39 × 10(−8)) of ANXA1 gene. Some candidate pathways have been identified related to SIS, including those linked to infection response and hypoxia, “ZHOU_INFLAMMATORY_RESPONSE_FIMA_DN” (P = 0.012) and “MANALO_HYPOXIA_UP” (P = 5.00 × 10(−5)). Our results provide novel clues for understanding the genetic mechanism of SIS. Genetics Society of America 2020-07-20 /pmc/articles/PMC7466970/ /pubmed/32690583 http://dx.doi.org/10.1534/g3.120.401257 Text en Copyright © 2020 Cheng et al. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Investigations
Cheng, Bolun
Ning, Yujie
Liang, Chujun
Li, Ping
Liu, Li
Cheng, Shiqiang
Ma, Mei
Zhang, Lu
Qi, Xin
Wen, Yan
Zhang, Feng
Genome-Wide Association Analysis Identified ANXA1 Associated with Shoulder Impingement Syndrome in UK Biobank Samples
title Genome-Wide Association Analysis Identified ANXA1 Associated with Shoulder Impingement Syndrome in UK Biobank Samples
title_full Genome-Wide Association Analysis Identified ANXA1 Associated with Shoulder Impingement Syndrome in UK Biobank Samples
title_fullStr Genome-Wide Association Analysis Identified ANXA1 Associated with Shoulder Impingement Syndrome in UK Biobank Samples
title_full_unstemmed Genome-Wide Association Analysis Identified ANXA1 Associated with Shoulder Impingement Syndrome in UK Biobank Samples
title_short Genome-Wide Association Analysis Identified ANXA1 Associated with Shoulder Impingement Syndrome in UK Biobank Samples
title_sort genome-wide association analysis identified anxa1 associated with shoulder impingement syndrome in uk biobank samples
topic Investigations
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7466970/
https://www.ncbi.nlm.nih.gov/pubmed/32690583
http://dx.doi.org/10.1534/g3.120.401257
work_keys_str_mv AT chengbolun genomewideassociationanalysisidentifiedanxa1associatedwithshoulderimpingementsyndromeinukbiobanksamples
AT ningyujie genomewideassociationanalysisidentifiedanxa1associatedwithshoulderimpingementsyndromeinukbiobanksamples
AT liangchujun genomewideassociationanalysisidentifiedanxa1associatedwithshoulderimpingementsyndromeinukbiobanksamples
AT liping genomewideassociationanalysisidentifiedanxa1associatedwithshoulderimpingementsyndromeinukbiobanksamples
AT liuli genomewideassociationanalysisidentifiedanxa1associatedwithshoulderimpingementsyndromeinukbiobanksamples
AT chengshiqiang genomewideassociationanalysisidentifiedanxa1associatedwithshoulderimpingementsyndromeinukbiobanksamples
AT mamei genomewideassociationanalysisidentifiedanxa1associatedwithshoulderimpingementsyndromeinukbiobanksamples
AT zhanglu genomewideassociationanalysisidentifiedanxa1associatedwithshoulderimpingementsyndromeinukbiobanksamples
AT qixin genomewideassociationanalysisidentifiedanxa1associatedwithshoulderimpingementsyndromeinukbiobanksamples
AT wenyan genomewideassociationanalysisidentifiedanxa1associatedwithshoulderimpingementsyndromeinukbiobanksamples
AT zhangfeng genomewideassociationanalysisidentifiedanxa1associatedwithshoulderimpingementsyndromeinukbiobanksamples