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The susceptibility of disulfide bonds towards radiation damage may be explained by S⋯O interactions

Radiation-induced damage to protein crystals during X-ray diffraction data collection is a major impediment to obtaining accurate structural information on macromolecules. Some of the specific impairments that are inflicted upon highly brilliant X-ray irradiation are metal-ion reduction, disulfide-b...

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Autores principales: Bhattacharyya, Rajasri, Dhar, Jesmita, Ghosh Dastidar, Shubhra, Chakrabarti, Pinak, Weiss, Manfred S.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: International Union of Crystallography 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7467163/
https://www.ncbi.nlm.nih.gov/pubmed/32939274
http://dx.doi.org/10.1107/S2052252520008520
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author Bhattacharyya, Rajasri
Dhar, Jesmita
Ghosh Dastidar, Shubhra
Chakrabarti, Pinak
Weiss, Manfred S.
author_facet Bhattacharyya, Rajasri
Dhar, Jesmita
Ghosh Dastidar, Shubhra
Chakrabarti, Pinak
Weiss, Manfred S.
author_sort Bhattacharyya, Rajasri
collection PubMed
description Radiation-induced damage to protein crystals during X-ray diffraction data collection is a major impediment to obtaining accurate structural information on macromolecules. Some of the specific impairments that are inflicted upon highly brilliant X-ray irradiation are metal-ion reduction, disulfide-bond cleavage and a loss of the integrity of the carboxyl groups of acidic residues. With respect to disulfide-bond reduction, previous results have indicated that not all disulfide bridges are equally susceptible to damage. A careful analysis of the chemical environment of disulfide bonds in the structures of elastase, lysozyme, acetylcholinesterase and other proteins suggests that S—S bonds which engage in a close contact with a carbonyl O atom along the extension of the S—S bond vector are more susceptible to reduction than the others. Such an arrangement predisposes electron transfer to occur from the O atom to the disulfide bond, leading to its reduction. The interaction between a nucleophile and an electrophile, akin to hydrogen bonding, stabilizes protein structures, but it also provides a pathway of electron transfer to the S—S bond, leading to its reduction during exposure of the protein crystal to an intense X-ray beam. An otherwise stabilizing interaction can thus be the cause of destabilization under the condition of radiation exposure.
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spelling pubmed-74671632020-09-15 The susceptibility of disulfide bonds towards radiation damage may be explained by S⋯O interactions Bhattacharyya, Rajasri Dhar, Jesmita Ghosh Dastidar, Shubhra Chakrabarti, Pinak Weiss, Manfred S. IUCrJ Research Papers Radiation-induced damage to protein crystals during X-ray diffraction data collection is a major impediment to obtaining accurate structural information on macromolecules. Some of the specific impairments that are inflicted upon highly brilliant X-ray irradiation are metal-ion reduction, disulfide-bond cleavage and a loss of the integrity of the carboxyl groups of acidic residues. With respect to disulfide-bond reduction, previous results have indicated that not all disulfide bridges are equally susceptible to damage. A careful analysis of the chemical environment of disulfide bonds in the structures of elastase, lysozyme, acetylcholinesterase and other proteins suggests that S—S bonds which engage in a close contact with a carbonyl O atom along the extension of the S—S bond vector are more susceptible to reduction than the others. Such an arrangement predisposes electron transfer to occur from the O atom to the disulfide bond, leading to its reduction. The interaction between a nucleophile and an electrophile, akin to hydrogen bonding, stabilizes protein structures, but it also provides a pathway of electron transfer to the S—S bond, leading to its reduction during exposure of the protein crystal to an intense X-ray beam. An otherwise stabilizing interaction can thus be the cause of destabilization under the condition of radiation exposure. International Union of Crystallography 2020-07-24 /pmc/articles/PMC7467163/ /pubmed/32939274 http://dx.doi.org/10.1107/S2052252520008520 Text en © Rajasri Bhattacharyya et al. 2020 http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Research Papers
Bhattacharyya, Rajasri
Dhar, Jesmita
Ghosh Dastidar, Shubhra
Chakrabarti, Pinak
Weiss, Manfred S.
The susceptibility of disulfide bonds towards radiation damage may be explained by S⋯O interactions
title The susceptibility of disulfide bonds towards radiation damage may be explained by S⋯O interactions
title_full The susceptibility of disulfide bonds towards radiation damage may be explained by S⋯O interactions
title_fullStr The susceptibility of disulfide bonds towards radiation damage may be explained by S⋯O interactions
title_full_unstemmed The susceptibility of disulfide bonds towards radiation damage may be explained by S⋯O interactions
title_short The susceptibility of disulfide bonds towards radiation damage may be explained by S⋯O interactions
title_sort susceptibility of disulfide bonds towards radiation damage may be explained by s⋯o interactions
topic Research Papers
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7467163/
https://www.ncbi.nlm.nih.gov/pubmed/32939274
http://dx.doi.org/10.1107/S2052252520008520
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