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Pushing the temporal resolution in absorption and Zernike phase contrast nanotomography: enabling fast in situ experiments
Hard X-ray nanotomography enables 3D investigations of a wide range of samples with high resolution (<100 nm) with both synchrotron-based and laboratory-based setups. However, the advantage of synchrotron-based setups is the high flux, enabling time resolution, which cannot be achieved at laborat...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
International Union of Crystallography
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7467338/ https://www.ncbi.nlm.nih.gov/pubmed/32876609 http://dx.doi.org/10.1107/S1600577520007407 |
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author | Flenner, Silja Storm, Malte Kubec, Adam Longo, Elena Döring, Florian Pelt, Daniël M. David, Christian Müller, Martin Greving, Imke |
author_facet | Flenner, Silja Storm, Malte Kubec, Adam Longo, Elena Döring, Florian Pelt, Daniël M. David, Christian Müller, Martin Greving, Imke |
author_sort | Flenner, Silja |
collection | PubMed |
description | Hard X-ray nanotomography enables 3D investigations of a wide range of samples with high resolution (<100 nm) with both synchrotron-based and laboratory-based setups. However, the advantage of synchrotron-based setups is the high flux, enabling time resolution, which cannot be achieved at laboratory sources. Here, the nanotomography setup at the imaging beamline P05 at PETRA III is presented, which offers high time resolution not only in absorption but for the first time also in Zernike phase contrast. Two test samples are used to evaluate the image quality in both contrast modalities based on the quantitative analysis of contrast-to-noise ratio (CNR) and spatial resolution. High-quality scans can be recorded in 15 min and fast scans down to 3 min are also possible without significant loss of image quality. At scan times well below 3 min, the CNR values decrease significantly and classical image-filtering techniques reach their limitation. A machine-learning approach shows promising results, enabling acquisition of a full tomography in only 6 s. Overall, the transmission X-ray microscopy instrument offers high temporal resolution in absorption and Zernike phase contrast, enabling in situ experiments at the beamline. |
format | Online Article Text |
id | pubmed-7467338 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | International Union of Crystallography |
record_format | MEDLINE/PubMed |
spelling | pubmed-74673382020-09-15 Pushing the temporal resolution in absorption and Zernike phase contrast nanotomography: enabling fast in situ experiments Flenner, Silja Storm, Malte Kubec, Adam Longo, Elena Döring, Florian Pelt, Daniël M. David, Christian Müller, Martin Greving, Imke J Synchrotron Radiat Research Papers Hard X-ray nanotomography enables 3D investigations of a wide range of samples with high resolution (<100 nm) with both synchrotron-based and laboratory-based setups. However, the advantage of synchrotron-based setups is the high flux, enabling time resolution, which cannot be achieved at laboratory sources. Here, the nanotomography setup at the imaging beamline P05 at PETRA III is presented, which offers high time resolution not only in absorption but for the first time also in Zernike phase contrast. Two test samples are used to evaluate the image quality in both contrast modalities based on the quantitative analysis of contrast-to-noise ratio (CNR) and spatial resolution. High-quality scans can be recorded in 15 min and fast scans down to 3 min are also possible without significant loss of image quality. At scan times well below 3 min, the CNR values decrease significantly and classical image-filtering techniques reach their limitation. A machine-learning approach shows promising results, enabling acquisition of a full tomography in only 6 s. Overall, the transmission X-ray microscopy instrument offers high temporal resolution in absorption and Zernike phase contrast, enabling in situ experiments at the beamline. International Union of Crystallography 2020-07-30 /pmc/articles/PMC7467338/ /pubmed/32876609 http://dx.doi.org/10.1107/S1600577520007407 Text en © Flenner et al. 2020 http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Research Papers Flenner, Silja Storm, Malte Kubec, Adam Longo, Elena Döring, Florian Pelt, Daniël M. David, Christian Müller, Martin Greving, Imke Pushing the temporal resolution in absorption and Zernike phase contrast nanotomography: enabling fast in situ experiments |
title | Pushing the temporal resolution in absorption and Zernike phase contrast nanotomography: enabling fast in situ experiments |
title_full | Pushing the temporal resolution in absorption and Zernike phase contrast nanotomography: enabling fast in situ experiments |
title_fullStr | Pushing the temporal resolution in absorption and Zernike phase contrast nanotomography: enabling fast in situ experiments |
title_full_unstemmed | Pushing the temporal resolution in absorption and Zernike phase contrast nanotomography: enabling fast in situ experiments |
title_short | Pushing the temporal resolution in absorption and Zernike phase contrast nanotomography: enabling fast in situ experiments |
title_sort | pushing the temporal resolution in absorption and zernike phase contrast nanotomography: enabling fast in situ experiments |
topic | Research Papers |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7467338/ https://www.ncbi.nlm.nih.gov/pubmed/32876609 http://dx.doi.org/10.1107/S1600577520007407 |
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