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Ultra-low-dose chest CT imaging of COVID-19 patients using a deep residual neural network

OBJECTIVES: The current study aimed to design an ultra-low-dose CT examination protocol using a deep learning approach suitable for clinical diagnosis of COVID-19 patients. METHODS: In this study, 800, 170, and 171 pairs of ultra-low-dose and full-dose CT images were used as input/output as training...

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Autores principales: Shiri, Isaac, Akhavanallaf, Azadeh, Sanaat, Amirhossein, Salimi, Yazdan, Askari, Dariush, Mansouri, Zahra, Shayesteh, Sajad P., Hasanian, Mohammad, Rezaei-Kalantari, Kiara, Salahshour, Ali, Sandoughdaran, Saleh, Abdollahi, Hamid, Arabi, Hossein, Zaidi, Habib
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer Berlin Heidelberg 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7467843/
https://www.ncbi.nlm.nih.gov/pubmed/32879987
http://dx.doi.org/10.1007/s00330-020-07225-6
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author Shiri, Isaac
Akhavanallaf, Azadeh
Sanaat, Amirhossein
Salimi, Yazdan
Askari, Dariush
Mansouri, Zahra
Shayesteh, Sajad P.
Hasanian, Mohammad
Rezaei-Kalantari, Kiara
Salahshour, Ali
Sandoughdaran, Saleh
Abdollahi, Hamid
Arabi, Hossein
Zaidi, Habib
author_facet Shiri, Isaac
Akhavanallaf, Azadeh
Sanaat, Amirhossein
Salimi, Yazdan
Askari, Dariush
Mansouri, Zahra
Shayesteh, Sajad P.
Hasanian, Mohammad
Rezaei-Kalantari, Kiara
Salahshour, Ali
Sandoughdaran, Saleh
Abdollahi, Hamid
Arabi, Hossein
Zaidi, Habib
author_sort Shiri, Isaac
collection PubMed
description OBJECTIVES: The current study aimed to design an ultra-low-dose CT examination protocol using a deep learning approach suitable for clinical diagnosis of COVID-19 patients. METHODS: In this study, 800, 170, and 171 pairs of ultra-low-dose and full-dose CT images were used as input/output as training, test, and external validation set, respectively, to implement the full-dose prediction technique. A residual convolutional neural network was applied to generate full-dose from ultra-low-dose CT images. The quality of predicted CT images was assessed using root mean square error (RMSE), structural similarity index (SSIM), and peak signal-to-noise ratio (PSNR). Scores ranging from 1 to 5 were assigned reflecting subjective assessment of image quality and related COVID-19 features, including ground glass opacities (GGO), crazy paving (CP), consolidation (CS), nodular infiltrates (NI), bronchovascular thickening (BVT), and pleural effusion (PE). RESULTS: The radiation dose in terms of CT dose index (CTDI(vol)) was reduced by up to 89%. The RMSE decreased from 0.16 ± 0.05 to 0.09 ± 0.02 and from 0.16 ± 0.06 to 0.08 ± 0.02 for the predicted compared with ultra-low-dose CT images in the test and external validation set, respectively. The overall scoring assigned by radiologists showed an acceptance rate of 4.72 ± 0.57 out of 5 for reference full-dose CT images, while ultra-low-dose CT images rated 2.78 ± 0.9. The predicted CT images using the deep learning algorithm achieved a score of 4.42 ± 0.8. CONCLUSIONS: The results demonstrated that the deep learning algorithm is capable of predicting standard full-dose CT images with acceptable quality for the clinical diagnosis of COVID-19 positive patients with substantial radiation dose reduction. KEY POINTS: • Ultra-low-dose CT imaging of COVID-19 patients would result in the loss of critical information about lesion types, which could potentially affect clinical diagnosis. • Deep learning–based prediction of full-dose from ultra-low-dose CT images for the diagnosis of COVID-19 could reduce the radiation dose by up to 89%. • Deep learning algorithms failed to recover the correct lesion structure/density for a number of patients considered outliers, and as such, further research and development is warranted to address these limitations. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (10.1007/s00330-020-07225-6) contains supplementary material, which is available to authorized users.
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spelling pubmed-74678432020-09-03 Ultra-low-dose chest CT imaging of COVID-19 patients using a deep residual neural network Shiri, Isaac Akhavanallaf, Azadeh Sanaat, Amirhossein Salimi, Yazdan Askari, Dariush Mansouri, Zahra Shayesteh, Sajad P. Hasanian, Mohammad Rezaei-Kalantari, Kiara Salahshour, Ali Sandoughdaran, Saleh Abdollahi, Hamid Arabi, Hossein Zaidi, Habib Eur Radiol Computed Tomography OBJECTIVES: The current study aimed to design an ultra-low-dose CT examination protocol using a deep learning approach suitable for clinical diagnosis of COVID-19 patients. METHODS: In this study, 800, 170, and 171 pairs of ultra-low-dose and full-dose CT images were used as input/output as training, test, and external validation set, respectively, to implement the full-dose prediction technique. A residual convolutional neural network was applied to generate full-dose from ultra-low-dose CT images. The quality of predicted CT images was assessed using root mean square error (RMSE), structural similarity index (SSIM), and peak signal-to-noise ratio (PSNR). Scores ranging from 1 to 5 were assigned reflecting subjective assessment of image quality and related COVID-19 features, including ground glass opacities (GGO), crazy paving (CP), consolidation (CS), nodular infiltrates (NI), bronchovascular thickening (BVT), and pleural effusion (PE). RESULTS: The radiation dose in terms of CT dose index (CTDI(vol)) was reduced by up to 89%. The RMSE decreased from 0.16 ± 0.05 to 0.09 ± 0.02 and from 0.16 ± 0.06 to 0.08 ± 0.02 for the predicted compared with ultra-low-dose CT images in the test and external validation set, respectively. The overall scoring assigned by radiologists showed an acceptance rate of 4.72 ± 0.57 out of 5 for reference full-dose CT images, while ultra-low-dose CT images rated 2.78 ± 0.9. The predicted CT images using the deep learning algorithm achieved a score of 4.42 ± 0.8. CONCLUSIONS: The results demonstrated that the deep learning algorithm is capable of predicting standard full-dose CT images with acceptable quality for the clinical diagnosis of COVID-19 positive patients with substantial radiation dose reduction. KEY POINTS: • Ultra-low-dose CT imaging of COVID-19 patients would result in the loss of critical information about lesion types, which could potentially affect clinical diagnosis. • Deep learning–based prediction of full-dose from ultra-low-dose CT images for the diagnosis of COVID-19 could reduce the radiation dose by up to 89%. • Deep learning algorithms failed to recover the correct lesion structure/density for a number of patients considered outliers, and as such, further research and development is warranted to address these limitations. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (10.1007/s00330-020-07225-6) contains supplementary material, which is available to authorized users. Springer Berlin Heidelberg 2020-09-03 2021 /pmc/articles/PMC7467843/ /pubmed/32879987 http://dx.doi.org/10.1007/s00330-020-07225-6 Text en © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Computed Tomography
Shiri, Isaac
Akhavanallaf, Azadeh
Sanaat, Amirhossein
Salimi, Yazdan
Askari, Dariush
Mansouri, Zahra
Shayesteh, Sajad P.
Hasanian, Mohammad
Rezaei-Kalantari, Kiara
Salahshour, Ali
Sandoughdaran, Saleh
Abdollahi, Hamid
Arabi, Hossein
Zaidi, Habib
Ultra-low-dose chest CT imaging of COVID-19 patients using a deep residual neural network
title Ultra-low-dose chest CT imaging of COVID-19 patients using a deep residual neural network
title_full Ultra-low-dose chest CT imaging of COVID-19 patients using a deep residual neural network
title_fullStr Ultra-low-dose chest CT imaging of COVID-19 patients using a deep residual neural network
title_full_unstemmed Ultra-low-dose chest CT imaging of COVID-19 patients using a deep residual neural network
title_short Ultra-low-dose chest CT imaging of COVID-19 patients using a deep residual neural network
title_sort ultra-low-dose chest ct imaging of covid-19 patients using a deep residual neural network
topic Computed Tomography
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7467843/
https://www.ncbi.nlm.nih.gov/pubmed/32879987
http://dx.doi.org/10.1007/s00330-020-07225-6
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