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Draft genome sequence of Clostridium jeddahense EE-R19 isolated from an anaerobic digester

OBJECTIVES: Clostridium species of the order Clostridiales are mostly strictly anaerobic rod-shaped bacteria. They can be detected in a variety of environments, including the intestines of humans and animals, soil, water, and biogas reactors. Species of the genus Clostridium are widely used in vario...

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Autores principales: Ziganshina, Elvira E., Mohammed, Waleed S., Ziganshin, Ayrat M.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7469366/
https://www.ncbi.nlm.nih.gov/pubmed/32883338
http://dx.doi.org/10.1186/s13104-020-05247-3
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author Ziganshina, Elvira E.
Mohammed, Waleed S.
Ziganshin, Ayrat M.
author_facet Ziganshina, Elvira E.
Mohammed, Waleed S.
Ziganshin, Ayrat M.
author_sort Ziganshina, Elvira E.
collection PubMed
description OBJECTIVES: Clostridium species of the order Clostridiales are mostly strictly anaerobic rod-shaped bacteria. They can be detected in a variety of environments, including the intestines of humans and animals, soil, water, and biogas reactors. Species of the genus Clostridium are widely used in various biotechnological processes, but several of them have been identified as significant human pathogens. Therefore, investigation at the genome level is necessary to provide valuable information about the ecology, genetics, and phylogenetic diversity of various Clostridium species. DATA DESCRIPTION: In the present study, we report the whole genome sequence of Clostridium jeddahense strain EE-R19, which was isolated from a mesophilic anaerobic digester. The draft genome of C. jeddahense EE-R19 consisted of 59 contigs (> 500 bp), which amounted to 3,562,974 with an overall G + C content of 51.79%. The whole genome shotgun project of C. jeddahense EE-R19 has been deposited at DDBJ/ENA/GenBank under the accession number JAAVNF000000000.
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spelling pubmed-74693662020-09-03 Draft genome sequence of Clostridium jeddahense EE-R19 isolated from an anaerobic digester Ziganshina, Elvira E. Mohammed, Waleed S. Ziganshin, Ayrat M. BMC Res Notes Data Note OBJECTIVES: Clostridium species of the order Clostridiales are mostly strictly anaerobic rod-shaped bacteria. They can be detected in a variety of environments, including the intestines of humans and animals, soil, water, and biogas reactors. Species of the genus Clostridium are widely used in various biotechnological processes, but several of them have been identified as significant human pathogens. Therefore, investigation at the genome level is necessary to provide valuable information about the ecology, genetics, and phylogenetic diversity of various Clostridium species. DATA DESCRIPTION: In the present study, we report the whole genome sequence of Clostridium jeddahense strain EE-R19, which was isolated from a mesophilic anaerobic digester. The draft genome of C. jeddahense EE-R19 consisted of 59 contigs (> 500 bp), which amounted to 3,562,974 with an overall G + C content of 51.79%. The whole genome shotgun project of C. jeddahense EE-R19 has been deposited at DDBJ/ENA/GenBank under the accession number JAAVNF000000000. BioMed Central 2020-09-03 /pmc/articles/PMC7469366/ /pubmed/32883338 http://dx.doi.org/10.1186/s13104-020-05247-3 Text en © The Author(s) 2020 Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Data Note
Ziganshina, Elvira E.
Mohammed, Waleed S.
Ziganshin, Ayrat M.
Draft genome sequence of Clostridium jeddahense EE-R19 isolated from an anaerobic digester
title Draft genome sequence of Clostridium jeddahense EE-R19 isolated from an anaerobic digester
title_full Draft genome sequence of Clostridium jeddahense EE-R19 isolated from an anaerobic digester
title_fullStr Draft genome sequence of Clostridium jeddahense EE-R19 isolated from an anaerobic digester
title_full_unstemmed Draft genome sequence of Clostridium jeddahense EE-R19 isolated from an anaerobic digester
title_short Draft genome sequence of Clostridium jeddahense EE-R19 isolated from an anaerobic digester
title_sort draft genome sequence of clostridium jeddahense ee-r19 isolated from an anaerobic digester
topic Data Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7469366/
https://www.ncbi.nlm.nih.gov/pubmed/32883338
http://dx.doi.org/10.1186/s13104-020-05247-3
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