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Development of Genomic DNA Certified Reference Materials for Genetically Modified Rice Kefeng 6

[Image: see text] The application of certified reference materials (CRMs) to genetically modified organism (GMO) detection is essential for guaranteeing the accuracy, comparability, and traceability of quantitative results over time and among laboratories. Clean leaves from GM rice Kefeng 6 were use...

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Autores principales: Li, Jun, Zhang, Li, Li, Liang, Li, Xiaying, Zhang, Xiujie, Zhai, Shanshan, Gao, Hongfei, Li, Yunjing, Wu, Gang, Wu, Yuhua
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Chemical Society 2020
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7469412/
https://www.ncbi.nlm.nih.gov/pubmed/32905288
http://dx.doi.org/10.1021/acsomega.0c02274
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author Li, Jun
Zhang, Li
Li, Liang
Li, Xiaying
Zhang, Xiujie
Zhai, Shanshan
Gao, Hongfei
Li, Yunjing
Wu, Gang
Wu, Yuhua
author_facet Li, Jun
Zhang, Li
Li, Liang
Li, Xiaying
Zhang, Xiujie
Zhai, Shanshan
Gao, Hongfei
Li, Yunjing
Wu, Gang
Wu, Yuhua
author_sort Li, Jun
collection PubMed
description [Image: see text] The application of certified reference materials (CRMs) to genetically modified organism (GMO) detection is essential for guaranteeing the accuracy, comparability, and traceability of quantitative results over time and among laboratories. Clean leaves from GM rice Kefeng 6 were used as raw materials to develop a batch of genomic DNA (gDNA) CRMs. The optimized KF6/PLD duplex digital PCR was used for collaborative characterization of Kefeng 6 gDNA CRMs by eight qualified laboratories; this batch of gDNA CRMs was certified for two property values, namely, copy number ratio and copy number concentration, which were 1.03 ± 0.04 and (1.60 ± 0.11) × 10(5) copies/μL, respectively. The gDNA CRMs displayed good between-vial homogeneity when the minimum sample intake of 2 μL was taken into account. Stability studies indicated that the gDNA CRMs should be transported below 25 °C, and cold chain transport was recommended. Shelf life was assessed to be at least 12 months, and when using gDNA CRMs, freeze–thaw should not exceed 10 cycles. Compared to the available gDNA CRMs in the market, this batch of gDNA CRMs has accurate property values with combined uncertainties, providing user-friendly calibrators for GM rice Kefeng 6 inspection and monitoring. The development and characterization of Kefeng 6 gDNA CRMs contribute to the establishment of a copy number-based reference system for GMO detection.
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spelling pubmed-74694122020-09-04 Development of Genomic DNA Certified Reference Materials for Genetically Modified Rice Kefeng 6 Li, Jun Zhang, Li Li, Liang Li, Xiaying Zhang, Xiujie Zhai, Shanshan Gao, Hongfei Li, Yunjing Wu, Gang Wu, Yuhua ACS Omega [Image: see text] The application of certified reference materials (CRMs) to genetically modified organism (GMO) detection is essential for guaranteeing the accuracy, comparability, and traceability of quantitative results over time and among laboratories. Clean leaves from GM rice Kefeng 6 were used as raw materials to develop a batch of genomic DNA (gDNA) CRMs. The optimized KF6/PLD duplex digital PCR was used for collaborative characterization of Kefeng 6 gDNA CRMs by eight qualified laboratories; this batch of gDNA CRMs was certified for two property values, namely, copy number ratio and copy number concentration, which were 1.03 ± 0.04 and (1.60 ± 0.11) × 10(5) copies/μL, respectively. The gDNA CRMs displayed good between-vial homogeneity when the minimum sample intake of 2 μL was taken into account. Stability studies indicated that the gDNA CRMs should be transported below 25 °C, and cold chain transport was recommended. Shelf life was assessed to be at least 12 months, and when using gDNA CRMs, freeze–thaw should not exceed 10 cycles. Compared to the available gDNA CRMs in the market, this batch of gDNA CRMs has accurate property values with combined uncertainties, providing user-friendly calibrators for GM rice Kefeng 6 inspection and monitoring. The development and characterization of Kefeng 6 gDNA CRMs contribute to the establishment of a copy number-based reference system for GMO detection. American Chemical Society 2020-08-18 /pmc/articles/PMC7469412/ /pubmed/32905288 http://dx.doi.org/10.1021/acsomega.0c02274 Text en Copyright © 2020 American Chemical Society This is an open access article published under an ACS AuthorChoice License (http://pubs.acs.org/page/policy/authorchoice_termsofuse.html) , which permits copying and redistribution of the article or any adaptations for non-commercial purposes.
spellingShingle Li, Jun
Zhang, Li
Li, Liang
Li, Xiaying
Zhang, Xiujie
Zhai, Shanshan
Gao, Hongfei
Li, Yunjing
Wu, Gang
Wu, Yuhua
Development of Genomic DNA Certified Reference Materials for Genetically Modified Rice Kefeng 6
title Development of Genomic DNA Certified Reference Materials for Genetically Modified Rice Kefeng 6
title_full Development of Genomic DNA Certified Reference Materials for Genetically Modified Rice Kefeng 6
title_fullStr Development of Genomic DNA Certified Reference Materials for Genetically Modified Rice Kefeng 6
title_full_unstemmed Development of Genomic DNA Certified Reference Materials for Genetically Modified Rice Kefeng 6
title_short Development of Genomic DNA Certified Reference Materials for Genetically Modified Rice Kefeng 6
title_sort development of genomic dna certified reference materials for genetically modified rice kefeng 6
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7469412/
https://www.ncbi.nlm.nih.gov/pubmed/32905288
http://dx.doi.org/10.1021/acsomega.0c02274
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