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RNA sequencing-based identification of potential targets in acute myeloid leukemia: A case report

Acute myeloid leukemia (AML) refers to heterogenous types of blood cancer which possess a complicated genomic landscape, and multiple novel mutational alterations are frequently being reported. Herein, a case report of a 37-year old AML patient is presented, who was diagnosed following laboratory in...

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Autores principales: El-Masry, Omar S., Al-Amri, Ali M., Alqatari, Ahlam, Alsamman, Khaldoon
Formato: Online Artículo Texto
Lenguaje:English
Publicado: D.A. Spandidos 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7469581/
https://www.ncbi.nlm.nih.gov/pubmed/32934815
http://dx.doi.org/10.3892/br.2020.1349
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author El-Masry, Omar S.
Al-Amri, Ali M.
Alqatari, Ahlam
Alsamman, Khaldoon
author_facet El-Masry, Omar S.
Al-Amri, Ali M.
Alqatari, Ahlam
Alsamman, Khaldoon
author_sort El-Masry, Omar S.
collection PubMed
description Acute myeloid leukemia (AML) refers to heterogenous types of blood cancer which possess a complicated genomic landscape, and multiple novel mutational alterations are frequently being reported. Herein, a case report of a 37-year old AML patient is presented, who was diagnosed following laboratory investigation after admission. The patient had thrombocytopenia, and three consecutive blast counts of 40, 30 and 41%, respectively. A blood sample was collected for whole-genome RNA sequencing to understand the transcriptomic profile at the time of diagnosis and compared with a matched female control. Gene expression was quantified using the RSEM software package. Bioinformatics analysis revealed a significant number of differentially expressed genes in the patient, suggesting a marked change in the transcriptomic landscape in this patient. By mining the bioinformatics data and screening the highly expressed genes with ≥80% probability of gene expression, four novel genes were highlighted that may serve as potential future targets in AML patients; Rh associated glycoprotein, succinate receptor 1, transmembrane-4 L-six family member-1 and ADGRA3, although further validation of their value is required.
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spelling pubmed-74695812020-09-14 RNA sequencing-based identification of potential targets in acute myeloid leukemia: A case report El-Masry, Omar S. Al-Amri, Ali M. Alqatari, Ahlam Alsamman, Khaldoon Biomed Rep Articles Acute myeloid leukemia (AML) refers to heterogenous types of blood cancer which possess a complicated genomic landscape, and multiple novel mutational alterations are frequently being reported. Herein, a case report of a 37-year old AML patient is presented, who was diagnosed following laboratory investigation after admission. The patient had thrombocytopenia, and three consecutive blast counts of 40, 30 and 41%, respectively. A blood sample was collected for whole-genome RNA sequencing to understand the transcriptomic profile at the time of diagnosis and compared with a matched female control. Gene expression was quantified using the RSEM software package. Bioinformatics analysis revealed a significant number of differentially expressed genes in the patient, suggesting a marked change in the transcriptomic landscape in this patient. By mining the bioinformatics data and screening the highly expressed genes with ≥80% probability of gene expression, four novel genes were highlighted that may serve as potential future targets in AML patients; Rh associated glycoprotein, succinate receptor 1, transmembrane-4 L-six family member-1 and ADGRA3, although further validation of their value is required. D.A. Spandidos 2020-11 2020-08-27 /pmc/articles/PMC7469581/ /pubmed/32934815 http://dx.doi.org/10.3892/br.2020.1349 Text en Copyright: © El-Masry et al. This is an open access article distributed under the terms of the Creative Commons Attribution-NonCommercial-NoDerivs License (https://creativecommons.org/licenses/by-nc-nd/4.0/) , which permits use and distribution in any medium, provided the original work is properly cited, the use is non-commercial and no modifications or adaptations are made.
spellingShingle Articles
El-Masry, Omar S.
Al-Amri, Ali M.
Alqatari, Ahlam
Alsamman, Khaldoon
RNA sequencing-based identification of potential targets in acute myeloid leukemia: A case report
title RNA sequencing-based identification of potential targets in acute myeloid leukemia: A case report
title_full RNA sequencing-based identification of potential targets in acute myeloid leukemia: A case report
title_fullStr RNA sequencing-based identification of potential targets in acute myeloid leukemia: A case report
title_full_unstemmed RNA sequencing-based identification of potential targets in acute myeloid leukemia: A case report
title_short RNA sequencing-based identification of potential targets in acute myeloid leukemia: A case report
title_sort rna sequencing-based identification of potential targets in acute myeloid leukemia: a case report
topic Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7469581/
https://www.ncbi.nlm.nih.gov/pubmed/32934815
http://dx.doi.org/10.3892/br.2020.1349
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