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RNA sequencing-based identification of potential targets in acute myeloid leukemia: A case report
Acute myeloid leukemia (AML) refers to heterogenous types of blood cancer which possess a complicated genomic landscape, and multiple novel mutational alterations are frequently being reported. Herein, a case report of a 37-year old AML patient is presented, who was diagnosed following laboratory in...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
D.A. Spandidos
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7469581/ https://www.ncbi.nlm.nih.gov/pubmed/32934815 http://dx.doi.org/10.3892/br.2020.1349 |
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author | El-Masry, Omar S. Al-Amri, Ali M. Alqatari, Ahlam Alsamman, Khaldoon |
author_facet | El-Masry, Omar S. Al-Amri, Ali M. Alqatari, Ahlam Alsamman, Khaldoon |
author_sort | El-Masry, Omar S. |
collection | PubMed |
description | Acute myeloid leukemia (AML) refers to heterogenous types of blood cancer which possess a complicated genomic landscape, and multiple novel mutational alterations are frequently being reported. Herein, a case report of a 37-year old AML patient is presented, who was diagnosed following laboratory investigation after admission. The patient had thrombocytopenia, and three consecutive blast counts of 40, 30 and 41%, respectively. A blood sample was collected for whole-genome RNA sequencing to understand the transcriptomic profile at the time of diagnosis and compared with a matched female control. Gene expression was quantified using the RSEM software package. Bioinformatics analysis revealed a significant number of differentially expressed genes in the patient, suggesting a marked change in the transcriptomic landscape in this patient. By mining the bioinformatics data and screening the highly expressed genes with ≥80% probability of gene expression, four novel genes were highlighted that may serve as potential future targets in AML patients; Rh associated glycoprotein, succinate receptor 1, transmembrane-4 L-six family member-1 and ADGRA3, although further validation of their value is required. |
format | Online Article Text |
id | pubmed-7469581 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | D.A. Spandidos |
record_format | MEDLINE/PubMed |
spelling | pubmed-74695812020-09-14 RNA sequencing-based identification of potential targets in acute myeloid leukemia: A case report El-Masry, Omar S. Al-Amri, Ali M. Alqatari, Ahlam Alsamman, Khaldoon Biomed Rep Articles Acute myeloid leukemia (AML) refers to heterogenous types of blood cancer which possess a complicated genomic landscape, and multiple novel mutational alterations are frequently being reported. Herein, a case report of a 37-year old AML patient is presented, who was diagnosed following laboratory investigation after admission. The patient had thrombocytopenia, and three consecutive blast counts of 40, 30 and 41%, respectively. A blood sample was collected for whole-genome RNA sequencing to understand the transcriptomic profile at the time of diagnosis and compared with a matched female control. Gene expression was quantified using the RSEM software package. Bioinformatics analysis revealed a significant number of differentially expressed genes in the patient, suggesting a marked change in the transcriptomic landscape in this patient. By mining the bioinformatics data and screening the highly expressed genes with ≥80% probability of gene expression, four novel genes were highlighted that may serve as potential future targets in AML patients; Rh associated glycoprotein, succinate receptor 1, transmembrane-4 L-six family member-1 and ADGRA3, although further validation of their value is required. D.A. Spandidos 2020-11 2020-08-27 /pmc/articles/PMC7469581/ /pubmed/32934815 http://dx.doi.org/10.3892/br.2020.1349 Text en Copyright: © El-Masry et al. This is an open access article distributed under the terms of the Creative Commons Attribution-NonCommercial-NoDerivs License (https://creativecommons.org/licenses/by-nc-nd/4.0/) , which permits use and distribution in any medium, provided the original work is properly cited, the use is non-commercial and no modifications or adaptations are made. |
spellingShingle | Articles El-Masry, Omar S. Al-Amri, Ali M. Alqatari, Ahlam Alsamman, Khaldoon RNA sequencing-based identification of potential targets in acute myeloid leukemia: A case report |
title | RNA sequencing-based identification of potential targets in acute myeloid leukemia: A case report |
title_full | RNA sequencing-based identification of potential targets in acute myeloid leukemia: A case report |
title_fullStr | RNA sequencing-based identification of potential targets in acute myeloid leukemia: A case report |
title_full_unstemmed | RNA sequencing-based identification of potential targets in acute myeloid leukemia: A case report |
title_short | RNA sequencing-based identification of potential targets in acute myeloid leukemia: A case report |
title_sort | rna sequencing-based identification of potential targets in acute myeloid leukemia: a case report |
topic | Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7469581/ https://www.ncbi.nlm.nih.gov/pubmed/32934815 http://dx.doi.org/10.3892/br.2020.1349 |
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