Cargando…

DNA backbone interactions impact the sequence specificity of DNA sulfur-binding domains: revelations from structural analyses

The sulfur atom of phosphorothioated DNA (PT-DNA) is coordinated by a surface cavity in the conserved sulfur-binding domain (SBD) of type IV restriction enzymes. However, some SBDs cannot recognize the sulfur atom in some sequence contexts. To illustrate the structural determinants for sequence spec...

Descripción completa

Detalles Bibliográficos
Autores principales:	Yu, Hao, Li, Jiayi, Liu, Guang, Zhao, Gong, Wang, Yuli, Hu, Wenyue, Deng, Zixin, Wu, Geng, Gan, Jianhua, Zhao, Yi-Lei, He, Xinyi
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Oxford University Press 2020
Materias:	Structural Biology
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7470945/ https://www.ncbi.nlm.nih.gov/pubmed/32621606 http://dx.doi.org/10.1093/nar/gkaa574

Ejemplares similares

Characterization of a promiscuous DNA sulfur binding domain and application in site-directed RNA base editing
por: Hu, Wenyue, et al.
Publicado: (2023)

Structural basis for the recognition of sulfur in phosphorothioated DNA
por: Liu, Guang, et al.
Publicado: (2018)

Hydrogen bond formation between the naturally modified nucleobase and phosphate backbone
por: Sheng, Jia, et al.
Publicado: (2012)

Structure of the N-glycosidase MilB in complex with hydroxymethyl CMP reveals its Arg23 specifically recognizes the substrate and controls its entry
por: Zhao, Gong, et al.
Publicado: (2014)

Targeting the ALS/FTD-associated A-DNA kink with anthracene-based metal complex causes DNA backbone straightening and groove contraction
por: Jhan, Cyong-Ru, et al.
Publicado: (2021)

dndDB: A Database Focused on Phosphorothioation of the DNA Backbone
por: Ou, Hong-Yu, et al.
Publicado: (2009)

Structural basis of DNA recognition by PCG2 reveals a novel DNA binding mode for winged helix-turn-helix domains
por: Liu, Junfeng, et al.
Publicado: (2015)

Novel DNA-binding element within the C-terminal extension of the nuclear receptor DNA-binding domain
por: Jakób, Michał, et al.
Publicado: (2007)

The DNA binding domain of the Vibrio vulnificus SmcR transcription factor is flexible and binds diverse DNA sequences
por: Newman, Jane D, et al.
Publicado: (2021)

Structures of apo IRF-3 and IRF-7 DNA binding domains: effect of loop L1 on DNA binding
por: De Ioannes, Pablo, et al.
Publicado: (2011)

The structural basis for recognition of base J containing DNA by a novel DNA binding domain in JBP1
por: Heidebrecht, Tatjana, et al.
Publicado: (2011)

Heterogeneous dynamics in DNA site discrimination by the structurally homologous DNA-binding domains of ETS-family transcription factors
por: He, Gaofei, et al.
Publicado: (2015)

Staggered intercalation of DNA duplexes with base-pair modulation by two distinct drug molecules induces asymmetric backbone twisting and structure polymorphism
por: Satange, Roshan, et al.
Publicado: (2022)

Structural mechanism of DNA recognition by the p204 HIN domain
por: Fan, Xiaojiao, et al.
Publicado: (2021)

Distinct Z-DNA binding mode of a PKR-like protein kinase containing a Z-DNA binding domain (PKZ)
por: Kim, Doyoun, et al.
Publicado: (2014)

The large terminase DNA packaging motor grips DNA with its ATPase domain for cleavage by the flexible nuclease domain
por: Hilbert, Brendan J., et al.
Publicado: (2017)

Recognition of methylated DNA through methyl-CpG binding domain proteins
por: Zou, Xueqing, et al.
Publicado: (2012)

Structural transitions during the cooperative assembly of baculovirus single-stranded DNA-binding protein on ssDNA
por: Yin, Jiayi, et al.
Publicado: (2022)

DNA Backbone Sulfur-Modification Expands Microbial Growth Range under Multiple Stresses by its anti-oxidation function
por: Yang, Yan, et al.
Publicado: (2017)

NMR structural analysis of DNA recognition by a novel Myb1 DNA-binding domain in the protozoan parasite Trichomonas vaginalis
por: Lou, Yuan-Chao, et al.
Publicado: (2009)

Structural basis of DNA replication origin recognition by human Orc6 protein binding with DNA
por: Xu, Naining, et al.
Publicado: (2020)

Structural basis of dimerization and dual W-box DNA recognition by rice WRKY domain
por: Cheng, Xiankun, et al.
Publicado: (2019)

Structural analysis and DNA binding of the HMG domains of the human mitochondrial transcription factor A
por: Gangelhoff, Todd A., et al.
Publicado: (2009)

Towards the classification of DYT6 dystonia mutants in the DNA-binding domain of THAP1
por: Campagne, Sébastien, et al.
Publicado: (2012)

Solution structure of the Z-DNA binding domain of PKR-like protein kinase from Carassius auratus and quantitative analyses of the intermediate complex during B–Z transition
por: Lee, Ae-Ree, et al.
Publicado: (2016)

Structures of apo- and ssDNA-bound YdbC from Lactococcus lactis uncover the function of protein domain family DUF2128 and expand the single-stranded DNA-binding domain proteome
por: Rossi, Paolo, et al.
Publicado: (2013)

Allosteric communication between DNA-binding and light-responsive domains of diatom class I aureochromes
por: Banerjee, Ankan, et al.
Publicado: (2016)

Structural basis of DNA binding to human YB-1 cold shock domain regulated by phosphorylation
por: Zhang, Jingfeng, et al.
Publicado: (2020)

Structure of the DNA-binding domain of NgTRF1 reveals unique features of plant telomere-binding proteins
por: Ko, Sunggeon, et al.
Publicado: (2008)

Structural and functional analyses of the interaction of archaeal RNA polymerase with DNA
por: Wojtas, Magdalena N., et al.
Publicado: (2012)

Crystal structures and identification of novel Cd(2+)-specific DNA aptamer
por: Liu, Hehua, et al.
Publicado: (2023)

Backbone chemical shift assignments of mouse HOXA13 DNA binding domain bound to duplex DNA
por: Zhang, Yonghong, et al.
Publicado: (2010)

CpG and methylation-dependent DNA binding and dynamics of the methylcytosine binding domain 2 protein at the single-molecule level
por: Pan, Hai, et al.
Publicado: (2017)

The orientation of the C-terminal domain of the Saccharomyces cerevisiae Rap1 protein is determined by its binding to DNA
por: Matot, Béatrice, et al.
Publicado: (2012)

DNA binding by FOXP3 domain-swapped dimer suggests mechanisms of long-range chromosomal interactions
por: Chen, Yongheng, et al.
Publicado: (2015)

The crystal structure of the DNA-binding domain of vIRF-1 from the oncogenic KSHV reveals a conserved fold for DNA binding and reinforces its role as a transcription factor
por: Hew, Kelly, et al.
Publicado: (2013)

A bacterial antirepressor with SH3 domain topology mimics operator DNA in sequestering the repressor DNA recognition helix
por: León, Esther, et al.
Publicado: (2010)

Analysis of the XPA and ssDNA-binding surfaces on the central domain of human ERCC1 reveals evidence for subfunctionalization
por: Tripsianes, Konstantinos, et al.
Publicado: (2007)

A novel zinc-binding fold in the helicase interaction domain of the Bacillus subtilis DnaI helicase loader
por: Loscha, Karin V., et al.
Publicado: (2009)

Structure and DNA binding activity of the mouse condensin hinge domain highlight common and diverse features of SMC proteins
por: Griese, Julia J., et al.
Publicado: (2010)

Cannot write session to /tmp/vufind_sessions/sess_38v4usjp0tpki9uhsesru8cj8m