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Assessing invasiveness of subsolid lung adenocarcinomas with combined attenuation and geometric feature models

The aim of this study was to develop and test multiclass predictive models for assessing the invasiveness of individual lung adenocarcinomas presenting as subsolid nodules on computed tomography (CT). 227 lung adenocarcinomas were included: 31 atypical adenomatous hyperplasia and adenocarcinomas in...

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Autores principales: de Margerie-Mellon, Constance, Gill, Ritu R., Salazar, Pascal, Oikonomou, Anastasia, Nguyen, Elsie T., Heidinger, Benedikt H., Medina, Mayra A., VanderLaan, Paul A., Bankier, Alexander A.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7471897/
https://www.ncbi.nlm.nih.gov/pubmed/32883973
http://dx.doi.org/10.1038/s41598-020-70316-3
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author de Margerie-Mellon, Constance
Gill, Ritu R.
Salazar, Pascal
Oikonomou, Anastasia
Nguyen, Elsie T.
Heidinger, Benedikt H.
Medina, Mayra A.
VanderLaan, Paul A.
Bankier, Alexander A.
author_facet de Margerie-Mellon, Constance
Gill, Ritu R.
Salazar, Pascal
Oikonomou, Anastasia
Nguyen, Elsie T.
Heidinger, Benedikt H.
Medina, Mayra A.
VanderLaan, Paul A.
Bankier, Alexander A.
author_sort de Margerie-Mellon, Constance
collection PubMed
description The aim of this study was to develop and test multiclass predictive models for assessing the invasiveness of individual lung adenocarcinomas presenting as subsolid nodules on computed tomography (CT). 227 lung adenocarcinomas were included: 31 atypical adenomatous hyperplasia and adenocarcinomas in situ (class H1), 64 minimally invasive adenocarcinomas (class H2) and 132 invasive adenocarcinomas (class H3). Nodules were segmented, and geometric and CT attenuation features including functional principal component analysis features (FPC1 and FPC2) were extracted. After a feature selection step, two predictive models were built with ordinal regression: Model 1 based on volume (log) (logarithm of the nodule volume) and FPC1, and Model 2 based on volume (log) and Q.875 (CT attenuation value at the 87.5% percentile). Using the 200-repeats Monte-Carlo cross-validation method, these models provided a multiclass classification of invasiveness with discriminative power AUCs of 0.83 to 0.87 and predicted the class probabilities with less than a 10% average error. The predictive modelling approach adopted in this paper provides a detailed insight on how the value of the main predictors contribute to the probability of nodule invasiveness and underlines the role of nodule CT attenuation features in the nodule invasiveness classification.
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spelling pubmed-74718972020-09-04 Assessing invasiveness of subsolid lung adenocarcinomas with combined attenuation and geometric feature models de Margerie-Mellon, Constance Gill, Ritu R. Salazar, Pascal Oikonomou, Anastasia Nguyen, Elsie T. Heidinger, Benedikt H. Medina, Mayra A. VanderLaan, Paul A. Bankier, Alexander A. Sci Rep Article The aim of this study was to develop and test multiclass predictive models for assessing the invasiveness of individual lung adenocarcinomas presenting as subsolid nodules on computed tomography (CT). 227 lung adenocarcinomas were included: 31 atypical adenomatous hyperplasia and adenocarcinomas in situ (class H1), 64 minimally invasive adenocarcinomas (class H2) and 132 invasive adenocarcinomas (class H3). Nodules were segmented, and geometric and CT attenuation features including functional principal component analysis features (FPC1 and FPC2) were extracted. After a feature selection step, two predictive models were built with ordinal regression: Model 1 based on volume (log) (logarithm of the nodule volume) and FPC1, and Model 2 based on volume (log) and Q.875 (CT attenuation value at the 87.5% percentile). Using the 200-repeats Monte-Carlo cross-validation method, these models provided a multiclass classification of invasiveness with discriminative power AUCs of 0.83 to 0.87 and predicted the class probabilities with less than a 10% average error. The predictive modelling approach adopted in this paper provides a detailed insight on how the value of the main predictors contribute to the probability of nodule invasiveness and underlines the role of nodule CT attenuation features in the nodule invasiveness classification. Nature Publishing Group UK 2020-09-03 /pmc/articles/PMC7471897/ /pubmed/32883973 http://dx.doi.org/10.1038/s41598-020-70316-3 Text en © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
de Margerie-Mellon, Constance
Gill, Ritu R.
Salazar, Pascal
Oikonomou, Anastasia
Nguyen, Elsie T.
Heidinger, Benedikt H.
Medina, Mayra A.
VanderLaan, Paul A.
Bankier, Alexander A.
Assessing invasiveness of subsolid lung adenocarcinomas with combined attenuation and geometric feature models
title Assessing invasiveness of subsolid lung adenocarcinomas with combined attenuation and geometric feature models
title_full Assessing invasiveness of subsolid lung adenocarcinomas with combined attenuation and geometric feature models
title_fullStr Assessing invasiveness of subsolid lung adenocarcinomas with combined attenuation and geometric feature models
title_full_unstemmed Assessing invasiveness of subsolid lung adenocarcinomas with combined attenuation and geometric feature models
title_short Assessing invasiveness of subsolid lung adenocarcinomas with combined attenuation and geometric feature models
title_sort assessing invasiveness of subsolid lung adenocarcinomas with combined attenuation and geometric feature models
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7471897/
https://www.ncbi.nlm.nih.gov/pubmed/32883973
http://dx.doi.org/10.1038/s41598-020-70316-3
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