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Apparent scaling of virus surface roughness—An example from the pandemic SARS-nCoV
This paper investigates the scaling of the surface roughness of coronavirus, including the SARS-nCoV based on fractal and spectral analyses of their published electron microscopy images. The box-counting fractal dimensions obtained are subjected to ANOVA tests for statistical significance. Results s...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier B.V.
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7471937/ https://www.ncbi.nlm.nih.gov/pubmed/32901164 http://dx.doi.org/10.1016/j.physd.2020.132704 |
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author | Padhy, Simanchal Dimri, Vijay P. |
author_facet | Padhy, Simanchal Dimri, Vijay P. |
author_sort | Padhy, Simanchal |
collection | PubMed |
description | This paper investigates the scaling of the surface roughness of coronavirus, including the SARS-nCoV based on fractal and spectral analyses of their published electron microscopy images. The box-counting fractal dimensions obtained are subjected to ANOVA tests for statistical significance. Results show that the SARS-nCoV particles could not statistically be resolved by their shape on the basis of the fractal dimension values, but they could be distinguished from the earlier SARS-CoV particles. MANOVA test results require interaction of factors used for classifying virions into different types. The topological entropies, a measure of randomness in a system, measured for the images of varying size show correlation with the fractal dimensions. Spectral analyses of our data show a departure from power-law self-similarity, suggesting an apparent scaling of surface roughness over a band of maximum an order of magnitude. The spectral crossover that corresponds to characteristic length scale may represent average viral size. Our results may be useful in inferring the nature of surface-contact between the viral and human cell, causing infection and also in providing clues for new drugs, although it is too early to say. In addition, limitations of this study, including possible ways to avoid the bias in scaling exponents due to the use of different techniques are discussed. |
format | Online Article Text |
id | pubmed-7471937 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Elsevier B.V. |
record_format | MEDLINE/PubMed |
spelling | pubmed-74719372020-09-04 Apparent scaling of virus surface roughness—An example from the pandemic SARS-nCoV Padhy, Simanchal Dimri, Vijay P. Physica D Article This paper investigates the scaling of the surface roughness of coronavirus, including the SARS-nCoV based on fractal and spectral analyses of their published electron microscopy images. The box-counting fractal dimensions obtained are subjected to ANOVA tests for statistical significance. Results show that the SARS-nCoV particles could not statistically be resolved by their shape on the basis of the fractal dimension values, but they could be distinguished from the earlier SARS-CoV particles. MANOVA test results require interaction of factors used for classifying virions into different types. The topological entropies, a measure of randomness in a system, measured for the images of varying size show correlation with the fractal dimensions. Spectral analyses of our data show a departure from power-law self-similarity, suggesting an apparent scaling of surface roughness over a band of maximum an order of magnitude. The spectral crossover that corresponds to characteristic length scale may represent average viral size. Our results may be useful in inferring the nature of surface-contact between the viral and human cell, causing infection and also in providing clues for new drugs, although it is too early to say. In addition, limitations of this study, including possible ways to avoid the bias in scaling exponents due to the use of different techniques are discussed. Elsevier B.V. 2020-12-15 2020-09-04 /pmc/articles/PMC7471937/ /pubmed/32901164 http://dx.doi.org/10.1016/j.physd.2020.132704 Text en © 2020 Elsevier B.V. All rights reserved. Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active. |
spellingShingle | Article Padhy, Simanchal Dimri, Vijay P. Apparent scaling of virus surface roughness—An example from the pandemic SARS-nCoV |
title | Apparent scaling of virus surface roughness—An example from the pandemic SARS-nCoV |
title_full | Apparent scaling of virus surface roughness—An example from the pandemic SARS-nCoV |
title_fullStr | Apparent scaling of virus surface roughness—An example from the pandemic SARS-nCoV |
title_full_unstemmed | Apparent scaling of virus surface roughness—An example from the pandemic SARS-nCoV |
title_short | Apparent scaling of virus surface roughness—An example from the pandemic SARS-nCoV |
title_sort | apparent scaling of virus surface roughness—an example from the pandemic sars-ncov |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7471937/ https://www.ncbi.nlm.nih.gov/pubmed/32901164 http://dx.doi.org/10.1016/j.physd.2020.132704 |
work_keys_str_mv | AT padhysimanchal apparentscalingofvirussurfaceroughnessanexamplefromthepandemicsarsncov AT dimrivijayp apparentscalingofvirussurfaceroughnessanexamplefromthepandemicsarsncov |