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In Field Detection of Downy Mildew Symptoms with Proximal Colour Imaging

This paper proposes to study the potentialities of on-board colour imaging for the in-field detection of a textbook case disease: the grapevine downy mildew. It introduces an algorithmic strategy for the detection of various forms of foliar symptoms on proximal high-resolution images. The proposed s...

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Autores principales: Abdelghafour, Florent, Keresztes, Barna, Germain, Christian, Da Costa, Jean-Pierre
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7472195/
https://www.ncbi.nlm.nih.gov/pubmed/32764472
http://dx.doi.org/10.3390/s20164380
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author Abdelghafour, Florent
Keresztes, Barna
Germain, Christian
Da Costa, Jean-Pierre
author_facet Abdelghafour, Florent
Keresztes, Barna
Germain, Christian
Da Costa, Jean-Pierre
author_sort Abdelghafour, Florent
collection PubMed
description This paper proposes to study the potentialities of on-board colour imaging for the in-field detection of a textbook case disease: the grapevine downy mildew. It introduces an algorithmic strategy for the detection of various forms of foliar symptoms on proximal high-resolution images. The proposed strategy is based on structure–colour representations and probabilistic models of grapevine tissues. It operates in three steps: (i) Formulating descriptors to extract the characteristic and discriminating properties of each class. They combine the Local Structure Tensors (LST) with colorimetric statistics calculated in pixel’s neighbourhood. (ii) Modelling the statistical distributions of these descriptors in each class. To account for the specific nature of LSTs, the descriptors are mapped in the Log-Euclidean space. In this space, the classes of interest can be modelled with mixtures of multivariate Gaussian distributions. (iii) Assigning each pixel to one of the classes according to its suitability to their models. The decision method is based on a “seed growth segmentation” process. This step exploits statistical criteria derived from the probabilistic model. The resulting processing chain reliably detects downy mildew symptoms and estimates the area of the affected tissues. A leave-one-out cross-validation is conducted on a dataset constituted of a hundred independent images of grapevines affected only by downy mildew and/or abiotic stresses. The proposed method achieves an extensive and accurate recovery of foliar symptoms, with on average, a 83% pixel-wise precision and a 76% pixel-wise recall.
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spelling pubmed-74721952020-09-04 In Field Detection of Downy Mildew Symptoms with Proximal Colour Imaging Abdelghafour, Florent Keresztes, Barna Germain, Christian Da Costa, Jean-Pierre Sensors (Basel) Article This paper proposes to study the potentialities of on-board colour imaging for the in-field detection of a textbook case disease: the grapevine downy mildew. It introduces an algorithmic strategy for the detection of various forms of foliar symptoms on proximal high-resolution images. The proposed strategy is based on structure–colour representations and probabilistic models of grapevine tissues. It operates in three steps: (i) Formulating descriptors to extract the characteristic and discriminating properties of each class. They combine the Local Structure Tensors (LST) with colorimetric statistics calculated in pixel’s neighbourhood. (ii) Modelling the statistical distributions of these descriptors in each class. To account for the specific nature of LSTs, the descriptors are mapped in the Log-Euclidean space. In this space, the classes of interest can be modelled with mixtures of multivariate Gaussian distributions. (iii) Assigning each pixel to one of the classes according to its suitability to their models. The decision method is based on a “seed growth segmentation” process. This step exploits statistical criteria derived from the probabilistic model. The resulting processing chain reliably detects downy mildew symptoms and estimates the area of the affected tissues. A leave-one-out cross-validation is conducted on a dataset constituted of a hundred independent images of grapevines affected only by downy mildew and/or abiotic stresses. The proposed method achieves an extensive and accurate recovery of foliar symptoms, with on average, a 83% pixel-wise precision and a 76% pixel-wise recall. MDPI 2020-08-05 /pmc/articles/PMC7472195/ /pubmed/32764472 http://dx.doi.org/10.3390/s20164380 Text en © 2020 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Abdelghafour, Florent
Keresztes, Barna
Germain, Christian
Da Costa, Jean-Pierre
In Field Detection of Downy Mildew Symptoms with Proximal Colour Imaging
title In Field Detection of Downy Mildew Symptoms with Proximal Colour Imaging
title_full In Field Detection of Downy Mildew Symptoms with Proximal Colour Imaging
title_fullStr In Field Detection of Downy Mildew Symptoms with Proximal Colour Imaging
title_full_unstemmed In Field Detection of Downy Mildew Symptoms with Proximal Colour Imaging
title_short In Field Detection of Downy Mildew Symptoms with Proximal Colour Imaging
title_sort in field detection of downy mildew symptoms with proximal colour imaging
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7472195/
https://www.ncbi.nlm.nih.gov/pubmed/32764472
http://dx.doi.org/10.3390/s20164380
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