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Breast Cancer Histopathology Image Classification Using an Ensemble of Deep Learning Models

Breast cancer is one of the major public health issues and is considered a leading cause of cancer-related deaths among women worldwide. Its early diagnosis can effectively help in increasing the chances of survival rate. To this end, biopsy is usually followed as a gold standard approach in which t...

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Autores principales: Hameed, Zabit, Zahia, Sofia, Garcia-Zapirain, Begonya, Javier Aguirre, José, María Vanegas, Ana
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7472736/
https://www.ncbi.nlm.nih.gov/pubmed/32764398
http://dx.doi.org/10.3390/s20164373
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author Hameed, Zabit
Zahia, Sofia
Garcia-Zapirain, Begonya
Javier Aguirre, José
María Vanegas, Ana
author_facet Hameed, Zabit
Zahia, Sofia
Garcia-Zapirain, Begonya
Javier Aguirre, José
María Vanegas, Ana
author_sort Hameed, Zabit
collection PubMed
description Breast cancer is one of the major public health issues and is considered a leading cause of cancer-related deaths among women worldwide. Its early diagnosis can effectively help in increasing the chances of survival rate. To this end, biopsy is usually followed as a gold standard approach in which tissues are collected for microscopic analysis. However, the histopathological analysis of breast cancer is non-trivial, labor-intensive, and may lead to a high degree of disagreement among pathologists. Therefore, an automatic diagnostic system could assist pathologists to improve the effectiveness of diagnostic processes. This paper presents an ensemble deep learning approach for the definite classification of non-carcinoma and carcinoma breast cancer histopathology images using our collected dataset. We trained four different models based on pre-trained VGG16 and VGG19 architectures. Initially, we followed 5-fold cross-validation operations on all the individual models, namely, fully-trained VGG16, fine-tuned VGG16, fully-trained VGG19, and fine-tuned VGG19 models. Then, we followed an ensemble strategy by taking the average of predicted probabilities and found that the ensemble of fine-tuned VGG16 and fine-tuned VGG19 performed competitive classification performance, especially on the carcinoma class. The ensemble of fine-tuned VGG16 and VGG19 models offered sensitivity of [Formula: see text] for carcinoma class and overall accuracy of [Formula: see text]. Also, it offered an F1 score of [Formula: see text]. These experimental results demonstrated that our proposed deep learning approach is effective for the automatic classification of complex-natured histopathology images of breast cancer, more specifically for carcinoma images.
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spelling pubmed-74727362020-09-17 Breast Cancer Histopathology Image Classification Using an Ensemble of Deep Learning Models Hameed, Zabit Zahia, Sofia Garcia-Zapirain, Begonya Javier Aguirre, José María Vanegas, Ana Sensors (Basel) Article Breast cancer is one of the major public health issues and is considered a leading cause of cancer-related deaths among women worldwide. Its early diagnosis can effectively help in increasing the chances of survival rate. To this end, biopsy is usually followed as a gold standard approach in which tissues are collected for microscopic analysis. However, the histopathological analysis of breast cancer is non-trivial, labor-intensive, and may lead to a high degree of disagreement among pathologists. Therefore, an automatic diagnostic system could assist pathologists to improve the effectiveness of diagnostic processes. This paper presents an ensemble deep learning approach for the definite classification of non-carcinoma and carcinoma breast cancer histopathology images using our collected dataset. We trained four different models based on pre-trained VGG16 and VGG19 architectures. Initially, we followed 5-fold cross-validation operations on all the individual models, namely, fully-trained VGG16, fine-tuned VGG16, fully-trained VGG19, and fine-tuned VGG19 models. Then, we followed an ensemble strategy by taking the average of predicted probabilities and found that the ensemble of fine-tuned VGG16 and fine-tuned VGG19 performed competitive classification performance, especially on the carcinoma class. The ensemble of fine-tuned VGG16 and VGG19 models offered sensitivity of [Formula: see text] for carcinoma class and overall accuracy of [Formula: see text]. Also, it offered an F1 score of [Formula: see text]. These experimental results demonstrated that our proposed deep learning approach is effective for the automatic classification of complex-natured histopathology images of breast cancer, more specifically for carcinoma images. MDPI 2020-08-05 /pmc/articles/PMC7472736/ /pubmed/32764398 http://dx.doi.org/10.3390/s20164373 Text en © 2020 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Hameed, Zabit
Zahia, Sofia
Garcia-Zapirain, Begonya
Javier Aguirre, José
María Vanegas, Ana
Breast Cancer Histopathology Image Classification Using an Ensemble of Deep Learning Models
title Breast Cancer Histopathology Image Classification Using an Ensemble of Deep Learning Models
title_full Breast Cancer Histopathology Image Classification Using an Ensemble of Deep Learning Models
title_fullStr Breast Cancer Histopathology Image Classification Using an Ensemble of Deep Learning Models
title_full_unstemmed Breast Cancer Histopathology Image Classification Using an Ensemble of Deep Learning Models
title_short Breast Cancer Histopathology Image Classification Using an Ensemble of Deep Learning Models
title_sort breast cancer histopathology image classification using an ensemble of deep learning models
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7472736/
https://www.ncbi.nlm.nih.gov/pubmed/32764398
http://dx.doi.org/10.3390/s20164373
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