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A realistic fish-habitat dataset to evaluate algorithms for underwater visual analysis

Visual analysis of complex fish habitats is an important step towards sustainable fisheries for human consumption and environmental protection. Deep Learning methods have shown great promise for scene analysis when trained on large-scale datasets. However, current datasets for fish analysis tend to...

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Autores principales: Saleh, Alzayat, Laradji, Issam H., Konovalov, Dmitry A., Bradley, Michael, Vazquez, David, Sheaves, Marcus
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7473859/
https://www.ncbi.nlm.nih.gov/pubmed/32887922
http://dx.doi.org/10.1038/s41598-020-71639-x
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author Saleh, Alzayat
Laradji, Issam H.
Konovalov, Dmitry A.
Bradley, Michael
Vazquez, David
Sheaves, Marcus
author_facet Saleh, Alzayat
Laradji, Issam H.
Konovalov, Dmitry A.
Bradley, Michael
Vazquez, David
Sheaves, Marcus
author_sort Saleh, Alzayat
collection PubMed
description Visual analysis of complex fish habitats is an important step towards sustainable fisheries for human consumption and environmental protection. Deep Learning methods have shown great promise for scene analysis when trained on large-scale datasets. However, current datasets for fish analysis tend to focus on the classification task within constrained, plain environments which do not capture the complexity of underwater fish habitats. To address this limitation, we present DeepFish as a benchmark suite with a large-scale dataset to train and test methods for several computer vision tasks. The dataset consists of approximately 40 thousand images collected underwater from 20 habitats in the marine-environments of tropical Australia. The dataset originally contained only classification labels. Thus, we collected point-level and segmentation labels to have a more comprehensive fish analysis benchmark. These labels enable models to learn to automatically monitor fish count, identify their locations, and estimate their sizes. Our experiments provide an in-depth analysis of the dataset characteristics, and the performance evaluation of several state-of-the-art approaches based on our benchmark. Although models pre-trained on ImageNet have successfully performed on this benchmark, there is still room for improvement. Therefore, this benchmark serves as a testbed to motivate further development in this challenging domain of underwater computer vision.
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spelling pubmed-74738592020-09-08 A realistic fish-habitat dataset to evaluate algorithms for underwater visual analysis Saleh, Alzayat Laradji, Issam H. Konovalov, Dmitry A. Bradley, Michael Vazquez, David Sheaves, Marcus Sci Rep Article Visual analysis of complex fish habitats is an important step towards sustainable fisheries for human consumption and environmental protection. Deep Learning methods have shown great promise for scene analysis when trained on large-scale datasets. However, current datasets for fish analysis tend to focus on the classification task within constrained, plain environments which do not capture the complexity of underwater fish habitats. To address this limitation, we present DeepFish as a benchmark suite with a large-scale dataset to train and test methods for several computer vision tasks. The dataset consists of approximately 40 thousand images collected underwater from 20 habitats in the marine-environments of tropical Australia. The dataset originally contained only classification labels. Thus, we collected point-level and segmentation labels to have a more comprehensive fish analysis benchmark. These labels enable models to learn to automatically monitor fish count, identify their locations, and estimate their sizes. Our experiments provide an in-depth analysis of the dataset characteristics, and the performance evaluation of several state-of-the-art approaches based on our benchmark. Although models pre-trained on ImageNet have successfully performed on this benchmark, there is still room for improvement. Therefore, this benchmark serves as a testbed to motivate further development in this challenging domain of underwater computer vision. Nature Publishing Group UK 2020-09-04 /pmc/articles/PMC7473859/ /pubmed/32887922 http://dx.doi.org/10.1038/s41598-020-71639-x Text en © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Saleh, Alzayat
Laradji, Issam H.
Konovalov, Dmitry A.
Bradley, Michael
Vazquez, David
Sheaves, Marcus
A realistic fish-habitat dataset to evaluate algorithms for underwater visual analysis
title A realistic fish-habitat dataset to evaluate algorithms for underwater visual analysis
title_full A realistic fish-habitat dataset to evaluate algorithms for underwater visual analysis
title_fullStr A realistic fish-habitat dataset to evaluate algorithms for underwater visual analysis
title_full_unstemmed A realistic fish-habitat dataset to evaluate algorithms for underwater visual analysis
title_short A realistic fish-habitat dataset to evaluate algorithms for underwater visual analysis
title_sort realistic fish-habitat dataset to evaluate algorithms for underwater visual analysis
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7473859/
https://www.ncbi.nlm.nih.gov/pubmed/32887922
http://dx.doi.org/10.1038/s41598-020-71639-x
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