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Cardiovascular/stroke risk prevention: A new machine learning framework integrating carotid ultrasound image-based phenotypes and its harmonics with conventional risk factors

MOTIVATION: Machine learning (ML)-based stroke risk stratification systems have typically focused on conventional risk factors (CRF) (AtheroRisk-conventional). Besides CRF, carotid ultrasound image phenotypes (CUSIP) have shown to be powerful phenotypes risk stratification. This is the first ML stud...

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Autores principales: Jamthikar, Ankush, Gupta, Deep, Khanna, Narendra N., Saba, Luca, Laird, John R., Suri, Jasjit S.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7474133/
https://www.ncbi.nlm.nih.gov/pubmed/32861380
http://dx.doi.org/10.1016/j.ihj.2020.06.004
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author Jamthikar, Ankush
Gupta, Deep
Khanna, Narendra N.
Saba, Luca
Laird, John R.
Suri, Jasjit S.
author_facet Jamthikar, Ankush
Gupta, Deep
Khanna, Narendra N.
Saba, Luca
Laird, John R.
Suri, Jasjit S.
author_sort Jamthikar, Ankush
collection PubMed
description MOTIVATION: Machine learning (ML)-based stroke risk stratification systems have typically focused on conventional risk factors (CRF) (AtheroRisk-conventional). Besides CRF, carotid ultrasound image phenotypes (CUSIP) have shown to be powerful phenotypes risk stratification. This is the first ML study of its kind that integrates CUSIP and CRF for risk stratification (AtheroRisk-integrated) and compares against AtheroRisk-conventional. METHODS: Two types of ML-based setups called (i) AtheroRisk-integrated and (ii) AtheroRisk-conventional were developed using random forest (RF) classifiers. AtheroRisk-conventional uses a feature set of 13 CRF such as age, gender, hemoglobin A1c, fasting blood sugar, low-density lipoprotein, and high-density lipoprotein (HDL) cholesterol, total cholesterol (TC), a ratio of TC and HDL, hypertension, smoking, family history, triglyceride, and ultrasound-based carotid plaque score. AtheroRisk-integrated system uses the feature set of 38 features with a combination of 13 CRF and 25 CUSIP features (6 types of current CUSIP, 6 types of 10-year CUSIP, 12 types of quadratic CUSIP (harmonics), and age-adjusted grayscale median). Logistic regression approach was used to select the significant features on which the RF classifier was trained. The performance of both ML systems was evaluated by area-under-the-curve (AUC) statistics computed using a leave-one-out cross-validation protocol. RESULTS: Left and right common carotid arteries of 202 Japanese patients were retrospectively examined to obtain 404 ultrasound scans. RF classifier showed higher improvement in AUC (~57%) for leave-one-out cross-validation protocol. Using RF classifier, AUC statistics for AtheroRisk-integrated system was higher (AUC = 0.99,p-value<0.001) compared to AtheroRisk-conventional (AUC = 0.63,p-value<0.001). CONCLUSION: The AtheroRisk-integrated ML system outperforms the AtheroRisk-conventional ML system using RF classifier.
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spelling pubmed-74741332020-09-15 Cardiovascular/stroke risk prevention: A new machine learning framework integrating carotid ultrasound image-based phenotypes and its harmonics with conventional risk factors Jamthikar, Ankush Gupta, Deep Khanna, Narendra N. Saba, Luca Laird, John R. Suri, Jasjit S. Indian Heart J Original Article MOTIVATION: Machine learning (ML)-based stroke risk stratification systems have typically focused on conventional risk factors (CRF) (AtheroRisk-conventional). Besides CRF, carotid ultrasound image phenotypes (CUSIP) have shown to be powerful phenotypes risk stratification. This is the first ML study of its kind that integrates CUSIP and CRF for risk stratification (AtheroRisk-integrated) and compares against AtheroRisk-conventional. METHODS: Two types of ML-based setups called (i) AtheroRisk-integrated and (ii) AtheroRisk-conventional were developed using random forest (RF) classifiers. AtheroRisk-conventional uses a feature set of 13 CRF such as age, gender, hemoglobin A1c, fasting blood sugar, low-density lipoprotein, and high-density lipoprotein (HDL) cholesterol, total cholesterol (TC), a ratio of TC and HDL, hypertension, smoking, family history, triglyceride, and ultrasound-based carotid plaque score. AtheroRisk-integrated system uses the feature set of 38 features with a combination of 13 CRF and 25 CUSIP features (6 types of current CUSIP, 6 types of 10-year CUSIP, 12 types of quadratic CUSIP (harmonics), and age-adjusted grayscale median). Logistic regression approach was used to select the significant features on which the RF classifier was trained. The performance of both ML systems was evaluated by area-under-the-curve (AUC) statistics computed using a leave-one-out cross-validation protocol. RESULTS: Left and right common carotid arteries of 202 Japanese patients were retrospectively examined to obtain 404 ultrasound scans. RF classifier showed higher improvement in AUC (~57%) for leave-one-out cross-validation protocol. Using RF classifier, AUC statistics for AtheroRisk-integrated system was higher (AUC = 0.99,p-value<0.001) compared to AtheroRisk-conventional (AUC = 0.63,p-value<0.001). CONCLUSION: The AtheroRisk-integrated ML system outperforms the AtheroRisk-conventional ML system using RF classifier. Elsevier 2020 2020-06-18 /pmc/articles/PMC7474133/ /pubmed/32861380 http://dx.doi.org/10.1016/j.ihj.2020.06.004 Text en © 2020 Cardiological Society of India. Published by Elsevier B.V. http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Original Article
Jamthikar, Ankush
Gupta, Deep
Khanna, Narendra N.
Saba, Luca
Laird, John R.
Suri, Jasjit S.
Cardiovascular/stroke risk prevention: A new machine learning framework integrating carotid ultrasound image-based phenotypes and its harmonics with conventional risk factors
title Cardiovascular/stroke risk prevention: A new machine learning framework integrating carotid ultrasound image-based phenotypes and its harmonics with conventional risk factors
title_full Cardiovascular/stroke risk prevention: A new machine learning framework integrating carotid ultrasound image-based phenotypes and its harmonics with conventional risk factors
title_fullStr Cardiovascular/stroke risk prevention: A new machine learning framework integrating carotid ultrasound image-based phenotypes and its harmonics with conventional risk factors
title_full_unstemmed Cardiovascular/stroke risk prevention: A new machine learning framework integrating carotid ultrasound image-based phenotypes and its harmonics with conventional risk factors
title_short Cardiovascular/stroke risk prevention: A new machine learning framework integrating carotid ultrasound image-based phenotypes and its harmonics with conventional risk factors
title_sort cardiovascular/stroke risk prevention: a new machine learning framework integrating carotid ultrasound image-based phenotypes and its harmonics with conventional risk factors
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7474133/
https://www.ncbi.nlm.nih.gov/pubmed/32861380
http://dx.doi.org/10.1016/j.ihj.2020.06.004
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