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Understanding atomic bonding and electronic distributions of a DNA molecule using DFT calculation and BOLS-BC model

Deoxyribonucleic acid (DNA) is an important molecule that has been extensively researched, mainly due to its structure and function. Herein, we investigated the electronic behavior of the DNA molecule containing 1008 atoms using density functional theory. The bond-charge (BC) model shows the relatio...

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Autores principales: Deng, Anlin, Li, Hanze, Bo, Maolin, Huang, ZhongKai, Li, Lei, Yao, Chuang, Li, Fengqin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7475201/
https://www.ncbi.nlm.nih.gov/pubmed/32923699
http://dx.doi.org/10.1016/j.bbrep.2020.100804
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author Deng, Anlin
Li, Hanze
Bo, Maolin
Huang, ZhongKai
Li, Lei
Yao, Chuang
Li, Fengqin
author_facet Deng, Anlin
Li, Hanze
Bo, Maolin
Huang, ZhongKai
Li, Lei
Yao, Chuang
Li, Fengqin
author_sort Deng, Anlin
collection PubMed
description Deoxyribonucleic acid (DNA) is an important molecule that has been extensively researched, mainly due to its structure and function. Herein, we investigated the electronic behavior of the DNA molecule containing 1008 atoms using density functional theory. The bond-charge (BC) model shows the relationship between charge density and atomic strain. Besides, the model mentioned above is combined with the bond-order-length-strength (BOLS) notion to calculate the atomic cohesive energy, the bond energy, and the local bond strain of the DNA chain. Using the BOLS-BC model, we were able to obtain information on the bonding features of the DNA chain and better comprehend the associated properties of electrons in biological systems. Consequently, this report functions as a theoretical reference for the precise regulation of the electrons and the bonding states of biological systems.
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spelling pubmed-74752012020-09-11 Understanding atomic bonding and electronic distributions of a DNA molecule using DFT calculation and BOLS-BC model Deng, Anlin Li, Hanze Bo, Maolin Huang, ZhongKai Li, Lei Yao, Chuang Li, Fengqin Biochem Biophys Rep Research Article Deoxyribonucleic acid (DNA) is an important molecule that has been extensively researched, mainly due to its structure and function. Herein, we investigated the electronic behavior of the DNA molecule containing 1008 atoms using density functional theory. The bond-charge (BC) model shows the relationship between charge density and atomic strain. Besides, the model mentioned above is combined with the bond-order-length-strength (BOLS) notion to calculate the atomic cohesive energy, the bond energy, and the local bond strain of the DNA chain. Using the BOLS-BC model, we were able to obtain information on the bonding features of the DNA chain and better comprehend the associated properties of electrons in biological systems. Consequently, this report functions as a theoretical reference for the precise regulation of the electrons and the bonding states of biological systems. Elsevier 2020-08-30 /pmc/articles/PMC7475201/ /pubmed/32923699 http://dx.doi.org/10.1016/j.bbrep.2020.100804 Text en © 2020 The Authors http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Research Article
Deng, Anlin
Li, Hanze
Bo, Maolin
Huang, ZhongKai
Li, Lei
Yao, Chuang
Li, Fengqin
Understanding atomic bonding and electronic distributions of a DNA molecule using DFT calculation and BOLS-BC model
title Understanding atomic bonding and electronic distributions of a DNA molecule using DFT calculation and BOLS-BC model
title_full Understanding atomic bonding and electronic distributions of a DNA molecule using DFT calculation and BOLS-BC model
title_fullStr Understanding atomic bonding and electronic distributions of a DNA molecule using DFT calculation and BOLS-BC model
title_full_unstemmed Understanding atomic bonding and electronic distributions of a DNA molecule using DFT calculation and BOLS-BC model
title_short Understanding atomic bonding and electronic distributions of a DNA molecule using DFT calculation and BOLS-BC model
title_sort understanding atomic bonding and electronic distributions of a dna molecule using dft calculation and bols-bc model
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7475201/
https://www.ncbi.nlm.nih.gov/pubmed/32923699
http://dx.doi.org/10.1016/j.bbrep.2020.100804
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