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Understanding atomic bonding and electronic distributions of a DNA molecule using DFT calculation and BOLS-BC model
Deoxyribonucleic acid (DNA) is an important molecule that has been extensively researched, mainly due to its structure and function. Herein, we investigated the electronic behavior of the DNA molecule containing 1008 atoms using density functional theory. The bond-charge (BC) model shows the relatio...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7475201/ https://www.ncbi.nlm.nih.gov/pubmed/32923699 http://dx.doi.org/10.1016/j.bbrep.2020.100804 |
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author | Deng, Anlin Li, Hanze Bo, Maolin Huang, ZhongKai Li, Lei Yao, Chuang Li, Fengqin |
author_facet | Deng, Anlin Li, Hanze Bo, Maolin Huang, ZhongKai Li, Lei Yao, Chuang Li, Fengqin |
author_sort | Deng, Anlin |
collection | PubMed |
description | Deoxyribonucleic acid (DNA) is an important molecule that has been extensively researched, mainly due to its structure and function. Herein, we investigated the electronic behavior of the DNA molecule containing 1008 atoms using density functional theory. The bond-charge (BC) model shows the relationship between charge density and atomic strain. Besides, the model mentioned above is combined with the bond-order-length-strength (BOLS) notion to calculate the atomic cohesive energy, the bond energy, and the local bond strain of the DNA chain. Using the BOLS-BC model, we were able to obtain information on the bonding features of the DNA chain and better comprehend the associated properties of electrons in biological systems. Consequently, this report functions as a theoretical reference for the precise regulation of the electrons and the bonding states of biological systems. |
format | Online Article Text |
id | pubmed-7475201 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-74752012020-09-11 Understanding atomic bonding and electronic distributions of a DNA molecule using DFT calculation and BOLS-BC model Deng, Anlin Li, Hanze Bo, Maolin Huang, ZhongKai Li, Lei Yao, Chuang Li, Fengqin Biochem Biophys Rep Research Article Deoxyribonucleic acid (DNA) is an important molecule that has been extensively researched, mainly due to its structure and function. Herein, we investigated the electronic behavior of the DNA molecule containing 1008 atoms using density functional theory. The bond-charge (BC) model shows the relationship between charge density and atomic strain. Besides, the model mentioned above is combined with the bond-order-length-strength (BOLS) notion to calculate the atomic cohesive energy, the bond energy, and the local bond strain of the DNA chain. Using the BOLS-BC model, we were able to obtain information on the bonding features of the DNA chain and better comprehend the associated properties of electrons in biological systems. Consequently, this report functions as a theoretical reference for the precise regulation of the electrons and the bonding states of biological systems. Elsevier 2020-08-30 /pmc/articles/PMC7475201/ /pubmed/32923699 http://dx.doi.org/10.1016/j.bbrep.2020.100804 Text en © 2020 The Authors http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/). |
spellingShingle | Research Article Deng, Anlin Li, Hanze Bo, Maolin Huang, ZhongKai Li, Lei Yao, Chuang Li, Fengqin Understanding atomic bonding and electronic distributions of a DNA molecule using DFT calculation and BOLS-BC model |
title | Understanding atomic bonding and electronic distributions of a DNA molecule using DFT calculation and BOLS-BC model |
title_full | Understanding atomic bonding and electronic distributions of a DNA molecule using DFT calculation and BOLS-BC model |
title_fullStr | Understanding atomic bonding and electronic distributions of a DNA molecule using DFT calculation and BOLS-BC model |
title_full_unstemmed | Understanding atomic bonding and electronic distributions of a DNA molecule using DFT calculation and BOLS-BC model |
title_short | Understanding atomic bonding and electronic distributions of a DNA molecule using DFT calculation and BOLS-BC model |
title_sort | understanding atomic bonding and electronic distributions of a dna molecule using dft calculation and bols-bc model |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7475201/ https://www.ncbi.nlm.nih.gov/pubmed/32923699 http://dx.doi.org/10.1016/j.bbrep.2020.100804 |
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