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Nanopore sequencing at Mars, Europa, and microgravity conditions

Nanopore sequencing, as represented by Oxford Nanopore Technologies’ MinION, is a promising technology for in situ life detection and for microbial monitoring including in support of human space exploration, due to its small size, low mass (~100 g) and low power (~1 W). Now ubiquitous on Earth and p...

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Autores principales: Carr, Christopher E., Bryan, Noelle C., Saboda, Kendall N., Bhattaru, Srinivasa A., Ruvkun, Gary, Zuber, Maria T.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7477557/
https://www.ncbi.nlm.nih.gov/pubmed/32964110
http://dx.doi.org/10.1038/s41526-020-00113-9
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author Carr, Christopher E.
Bryan, Noelle C.
Saboda, Kendall N.
Bhattaru, Srinivasa A.
Ruvkun, Gary
Zuber, Maria T.
author_facet Carr, Christopher E.
Bryan, Noelle C.
Saboda, Kendall N.
Bhattaru, Srinivasa A.
Ruvkun, Gary
Zuber, Maria T.
author_sort Carr, Christopher E.
collection PubMed
description Nanopore sequencing, as represented by Oxford Nanopore Technologies’ MinION, is a promising technology for in situ life detection and for microbial monitoring including in support of human space exploration, due to its small size, low mass (~100 g) and low power (~1 W). Now ubiquitous on Earth and previously demonstrated on the International Space Station (ISS), nanopore sequencing involves translocation of DNA through a biological nanopore on timescales of milliseconds per base. Nanopore sequencing is now being done in both controlled lab settings as well as in diverse environments that include ground, air, and space vehicles. Future space missions may also utilize nanopore sequencing in reduced gravity environments, such as in the search for life on Mars (Earth-relative gravito-inertial acceleration (GIA) g = 0.378), or at icy moons such as Europa (g = 0.134) or Enceladus (g = 0.012). We confirm the ability to sequence at Mars as well as near Europa or Lunar (g = 0.166) and lower g levels, demonstrate the functionality of updated chemistry and sequencing protocols under parabolic flight, and reveal consistent performance across g level, during dynamic accelerations, and despite vibrations with significant power at translocation-relevant frequencies. Our work strengthens the use case for nanopore sequencing in dynamic environments on Earth and in space, including as part of the search for nucleic-acid based life beyond Earth.
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spelling pubmed-74775572020-09-21 Nanopore sequencing at Mars, Europa, and microgravity conditions Carr, Christopher E. Bryan, Noelle C. Saboda, Kendall N. Bhattaru, Srinivasa A. Ruvkun, Gary Zuber, Maria T. NPJ Microgravity Article Nanopore sequencing, as represented by Oxford Nanopore Technologies’ MinION, is a promising technology for in situ life detection and for microbial monitoring including in support of human space exploration, due to its small size, low mass (~100 g) and low power (~1 W). Now ubiquitous on Earth and previously demonstrated on the International Space Station (ISS), nanopore sequencing involves translocation of DNA through a biological nanopore on timescales of milliseconds per base. Nanopore sequencing is now being done in both controlled lab settings as well as in diverse environments that include ground, air, and space vehicles. Future space missions may also utilize nanopore sequencing in reduced gravity environments, such as in the search for life on Mars (Earth-relative gravito-inertial acceleration (GIA) g = 0.378), or at icy moons such as Europa (g = 0.134) or Enceladus (g = 0.012). We confirm the ability to sequence at Mars as well as near Europa or Lunar (g = 0.166) and lower g levels, demonstrate the functionality of updated chemistry and sequencing protocols under parabolic flight, and reveal consistent performance across g level, during dynamic accelerations, and despite vibrations with significant power at translocation-relevant frequencies. Our work strengthens the use case for nanopore sequencing in dynamic environments on Earth and in space, including as part of the search for nucleic-acid based life beyond Earth. Nature Publishing Group UK 2020-09-07 /pmc/articles/PMC7477557/ /pubmed/32964110 http://dx.doi.org/10.1038/s41526-020-00113-9 Text en © The Author(s) 2020 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Carr, Christopher E.
Bryan, Noelle C.
Saboda, Kendall N.
Bhattaru, Srinivasa A.
Ruvkun, Gary
Zuber, Maria T.
Nanopore sequencing at Mars, Europa, and microgravity conditions
title Nanopore sequencing at Mars, Europa, and microgravity conditions
title_full Nanopore sequencing at Mars, Europa, and microgravity conditions
title_fullStr Nanopore sequencing at Mars, Europa, and microgravity conditions
title_full_unstemmed Nanopore sequencing at Mars, Europa, and microgravity conditions
title_short Nanopore sequencing at Mars, Europa, and microgravity conditions
title_sort nanopore sequencing at mars, europa, and microgravity conditions
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7477557/
https://www.ncbi.nlm.nih.gov/pubmed/32964110
http://dx.doi.org/10.1038/s41526-020-00113-9
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