Cargando…

Radio-pathomic mapping model generated using annotations from five pathologists reliably distinguishes high-grade prostate cancer

Purpose: Our study predictively maps epithelium density in magnetic resonance imaging (MRI) space while varying the ground truth labels provided by five pathologists to quantify the downstream effects of interobserver variability. Approach: Clinical imaging and postsurgical tissue from 48 recruited...

Descripción completa

Detalles Bibliográficos
Autores principales: McGarry, Sean D., Bukowy, John D., Iczkowski, Kenneth A., Lowman, Allison K., Brehler, Michael, Bobholz, Samuel, Nencka, Andrew, Barrington, Alex, Jacobsohn, Kenneth, Unteriner, Jackson, Duvnjak, Petar, Griffin, Michael, Hohenwalter, Mark, Keuter, Tucker, Huang, Wei, Antic, Tatjana, Paner, Gladell, Palangmonthip, Watchareepohn, Banerjee, Anjishnu, LaViolette, Peter S.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Society of Photo-Optical Instrumentation Engineers 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7479263/
https://www.ncbi.nlm.nih.gov/pubmed/32923510
http://dx.doi.org/10.1117/1.JMI.7.5.054501
_version_ 1783580234086350848
author McGarry, Sean D.
Bukowy, John D.
Iczkowski, Kenneth A.
Lowman, Allison K.
Brehler, Michael
Bobholz, Samuel
Nencka, Andrew
Barrington, Alex
Jacobsohn, Kenneth
Unteriner, Jackson
Duvnjak, Petar
Griffin, Michael
Hohenwalter, Mark
Keuter, Tucker
Huang, Wei
Antic, Tatjana
Paner, Gladell
Palangmonthip, Watchareepohn
Banerjee, Anjishnu
LaViolette, Peter S.
author_facet McGarry, Sean D.
Bukowy, John D.
Iczkowski, Kenneth A.
Lowman, Allison K.
Brehler, Michael
Bobholz, Samuel
Nencka, Andrew
Barrington, Alex
Jacobsohn, Kenneth
Unteriner, Jackson
Duvnjak, Petar
Griffin, Michael
Hohenwalter, Mark
Keuter, Tucker
Huang, Wei
Antic, Tatjana
Paner, Gladell
Palangmonthip, Watchareepohn
Banerjee, Anjishnu
LaViolette, Peter S.
author_sort McGarry, Sean D.
collection PubMed
description Purpose: Our study predictively maps epithelium density in magnetic resonance imaging (MRI) space while varying the ground truth labels provided by five pathologists to quantify the downstream effects of interobserver variability. Approach: Clinical imaging and postsurgical tissue from 48 recruited prospective patients were used in our study. Tissue was sliced to match the MRI orientation and whole-mount slides were stained and digitized. Data from 28 patients ([Formula: see text] slides) were sent to five pathologists to be annotated. Slides from the remaining 20 patients ([Formula: see text] slides) were annotated by one of the five pathologists. Interpathologist variability was measured using Krippendorff’s alpha. Pathologist-specific radiopathomic mapping models were trained using a partial least-squares regression using MRI values to predict epithelium density, a known marker for disease severity. An analysis of variance characterized intermodel means difference in epithelium density. A consensus model was created and evaluated using a receiver operator characteristic classifying high grade versus low grade and benign, and was statistically compared to apparent diffusion coefficient (ADC). Results: Interobserver variability ranged from low to acceptable agreement (0.31 to 0.69). There was a statistically significant difference in mean predicted epithelium density values ([Formula: see text]) between the five models. The consensus model outperformed ADC (areas under the curve = 0.80 and 0.71, respectively, [Formula: see text]). Conclusion: We demonstrate that radiopathomic maps of epithelium density are sensitive to the pathologist annotating the dataset; however, it is unclear if these differences are clinically significant. The consensus model produced the best maps, matched the performance of the best individual model, and outperformed ADC.
format Online
Article
Text
id pubmed-7479263
institution National Center for Biotechnology Information
language English
publishDate 2020
publisher Society of Photo-Optical Instrumentation Engineers
record_format MEDLINE/PubMed
spelling pubmed-74792632021-09-09 Radio-pathomic mapping model generated using annotations from five pathologists reliably distinguishes high-grade prostate cancer McGarry, Sean D. Bukowy, John D. Iczkowski, Kenneth A. Lowman, Allison K. Brehler, Michael Bobholz, Samuel Nencka, Andrew Barrington, Alex Jacobsohn, Kenneth Unteriner, Jackson Duvnjak, Petar Griffin, Michael Hohenwalter, Mark Keuter, Tucker Huang, Wei Antic, Tatjana Paner, Gladell Palangmonthip, Watchareepohn Banerjee, Anjishnu LaViolette, Peter S. J Med Imaging (Bellingham) Computer-Aided Diagnosis Purpose: Our study predictively maps epithelium density in magnetic resonance imaging (MRI) space while varying the ground truth labels provided by five pathologists to quantify the downstream effects of interobserver variability. Approach: Clinical imaging and postsurgical tissue from 48 recruited prospective patients were used in our study. Tissue was sliced to match the MRI orientation and whole-mount slides were stained and digitized. Data from 28 patients ([Formula: see text] slides) were sent to five pathologists to be annotated. Slides from the remaining 20 patients ([Formula: see text] slides) were annotated by one of the five pathologists. Interpathologist variability was measured using Krippendorff’s alpha. Pathologist-specific radiopathomic mapping models were trained using a partial least-squares regression using MRI values to predict epithelium density, a known marker for disease severity. An analysis of variance characterized intermodel means difference in epithelium density. A consensus model was created and evaluated using a receiver operator characteristic classifying high grade versus low grade and benign, and was statistically compared to apparent diffusion coefficient (ADC). Results: Interobserver variability ranged from low to acceptable agreement (0.31 to 0.69). There was a statistically significant difference in mean predicted epithelium density values ([Formula: see text]) between the five models. The consensus model outperformed ADC (areas under the curve = 0.80 and 0.71, respectively, [Formula: see text]). Conclusion: We demonstrate that radiopathomic maps of epithelium density are sensitive to the pathologist annotating the dataset; however, it is unclear if these differences are clinically significant. The consensus model produced the best maps, matched the performance of the best individual model, and outperformed ADC. Society of Photo-Optical Instrumentation Engineers 2020-09-09 2020-09 /pmc/articles/PMC7479263/ /pubmed/32923510 http://dx.doi.org/10.1117/1.JMI.7.5.054501 Text en © 2020 The Authors https://creativecommons.org/licenses/by/4.0/ Published by SPIE under a Creative Commons Attribution 4.0 Unported License. Distribution or reproduction of this work in whole or in part requires full attribution of the original publication, including its DOI.
spellingShingle Computer-Aided Diagnosis
McGarry, Sean D.
Bukowy, John D.
Iczkowski, Kenneth A.
Lowman, Allison K.
Brehler, Michael
Bobholz, Samuel
Nencka, Andrew
Barrington, Alex
Jacobsohn, Kenneth
Unteriner, Jackson
Duvnjak, Petar
Griffin, Michael
Hohenwalter, Mark
Keuter, Tucker
Huang, Wei
Antic, Tatjana
Paner, Gladell
Palangmonthip, Watchareepohn
Banerjee, Anjishnu
LaViolette, Peter S.
Radio-pathomic mapping model generated using annotations from five pathologists reliably distinguishes high-grade prostate cancer
title Radio-pathomic mapping model generated using annotations from five pathologists reliably distinguishes high-grade prostate cancer
title_full Radio-pathomic mapping model generated using annotations from five pathologists reliably distinguishes high-grade prostate cancer
title_fullStr Radio-pathomic mapping model generated using annotations from five pathologists reliably distinguishes high-grade prostate cancer
title_full_unstemmed Radio-pathomic mapping model generated using annotations from five pathologists reliably distinguishes high-grade prostate cancer
title_short Radio-pathomic mapping model generated using annotations from five pathologists reliably distinguishes high-grade prostate cancer
title_sort radio-pathomic mapping model generated using annotations from five pathologists reliably distinguishes high-grade prostate cancer
topic Computer-Aided Diagnosis
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7479263/
https://www.ncbi.nlm.nih.gov/pubmed/32923510
http://dx.doi.org/10.1117/1.JMI.7.5.054501
work_keys_str_mv AT mcgarryseand radiopathomicmappingmodelgeneratedusingannotationsfromfivepathologistsreliablydistinguisheshighgradeprostatecancer
AT bukowyjohnd radiopathomicmappingmodelgeneratedusingannotationsfromfivepathologistsreliablydistinguisheshighgradeprostatecancer
AT iczkowskikennetha radiopathomicmappingmodelgeneratedusingannotationsfromfivepathologistsreliablydistinguisheshighgradeprostatecancer
AT lowmanallisonk radiopathomicmappingmodelgeneratedusingannotationsfromfivepathologistsreliablydistinguisheshighgradeprostatecancer
AT brehlermichael radiopathomicmappingmodelgeneratedusingannotationsfromfivepathologistsreliablydistinguisheshighgradeprostatecancer
AT bobholzsamuel radiopathomicmappingmodelgeneratedusingannotationsfromfivepathologistsreliablydistinguisheshighgradeprostatecancer
AT nenckaandrew radiopathomicmappingmodelgeneratedusingannotationsfromfivepathologistsreliablydistinguisheshighgradeprostatecancer
AT barringtonalex radiopathomicmappingmodelgeneratedusingannotationsfromfivepathologistsreliablydistinguisheshighgradeprostatecancer
AT jacobsohnkenneth radiopathomicmappingmodelgeneratedusingannotationsfromfivepathologistsreliablydistinguisheshighgradeprostatecancer
AT unterinerjackson radiopathomicmappingmodelgeneratedusingannotationsfromfivepathologistsreliablydistinguisheshighgradeprostatecancer
AT duvnjakpetar radiopathomicmappingmodelgeneratedusingannotationsfromfivepathologistsreliablydistinguisheshighgradeprostatecancer
AT griffinmichael radiopathomicmappingmodelgeneratedusingannotationsfromfivepathologistsreliablydistinguisheshighgradeprostatecancer
AT hohenwaltermark radiopathomicmappingmodelgeneratedusingannotationsfromfivepathologistsreliablydistinguisheshighgradeprostatecancer
AT keutertucker radiopathomicmappingmodelgeneratedusingannotationsfromfivepathologistsreliablydistinguisheshighgradeprostatecancer
AT huangwei radiopathomicmappingmodelgeneratedusingannotationsfromfivepathologistsreliablydistinguisheshighgradeprostatecancer
AT antictatjana radiopathomicmappingmodelgeneratedusingannotationsfromfivepathologistsreliablydistinguisheshighgradeprostatecancer
AT panergladell radiopathomicmappingmodelgeneratedusingannotationsfromfivepathologistsreliablydistinguisheshighgradeprostatecancer
AT palangmonthipwatchareepohn radiopathomicmappingmodelgeneratedusingannotationsfromfivepathologistsreliablydistinguisheshighgradeprostatecancer
AT banerjeeanjishnu radiopathomicmappingmodelgeneratedusingannotationsfromfivepathologistsreliablydistinguisheshighgradeprostatecancer
AT laviolettepeters radiopathomicmappingmodelgeneratedusingannotationsfromfivepathologistsreliablydistinguisheshighgradeprostatecancer