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Radio-pathomic mapping model generated using annotations from five pathologists reliably distinguishes high-grade prostate cancer
Purpose: Our study predictively maps epithelium density in magnetic resonance imaging (MRI) space while varying the ground truth labels provided by five pathologists to quantify the downstream effects of interobserver variability. Approach: Clinical imaging and postsurgical tissue from 48 recruited...
Autores principales: | , , , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Society of Photo-Optical Instrumentation Engineers
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7479263/ https://www.ncbi.nlm.nih.gov/pubmed/32923510 http://dx.doi.org/10.1117/1.JMI.7.5.054501 |
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author | McGarry, Sean D. Bukowy, John D. Iczkowski, Kenneth A. Lowman, Allison K. Brehler, Michael Bobholz, Samuel Nencka, Andrew Barrington, Alex Jacobsohn, Kenneth Unteriner, Jackson Duvnjak, Petar Griffin, Michael Hohenwalter, Mark Keuter, Tucker Huang, Wei Antic, Tatjana Paner, Gladell Palangmonthip, Watchareepohn Banerjee, Anjishnu LaViolette, Peter S. |
author_facet | McGarry, Sean D. Bukowy, John D. Iczkowski, Kenneth A. Lowman, Allison K. Brehler, Michael Bobholz, Samuel Nencka, Andrew Barrington, Alex Jacobsohn, Kenneth Unteriner, Jackson Duvnjak, Petar Griffin, Michael Hohenwalter, Mark Keuter, Tucker Huang, Wei Antic, Tatjana Paner, Gladell Palangmonthip, Watchareepohn Banerjee, Anjishnu LaViolette, Peter S. |
author_sort | McGarry, Sean D. |
collection | PubMed |
description | Purpose: Our study predictively maps epithelium density in magnetic resonance imaging (MRI) space while varying the ground truth labels provided by five pathologists to quantify the downstream effects of interobserver variability. Approach: Clinical imaging and postsurgical tissue from 48 recruited prospective patients were used in our study. Tissue was sliced to match the MRI orientation and whole-mount slides were stained and digitized. Data from 28 patients ([Formula: see text] slides) were sent to five pathologists to be annotated. Slides from the remaining 20 patients ([Formula: see text] slides) were annotated by one of the five pathologists. Interpathologist variability was measured using Krippendorff’s alpha. Pathologist-specific radiopathomic mapping models were trained using a partial least-squares regression using MRI values to predict epithelium density, a known marker for disease severity. An analysis of variance characterized intermodel means difference in epithelium density. A consensus model was created and evaluated using a receiver operator characteristic classifying high grade versus low grade and benign, and was statistically compared to apparent diffusion coefficient (ADC). Results: Interobserver variability ranged from low to acceptable agreement (0.31 to 0.69). There was a statistically significant difference in mean predicted epithelium density values ([Formula: see text]) between the five models. The consensus model outperformed ADC (areas under the curve = 0.80 and 0.71, respectively, [Formula: see text]). Conclusion: We demonstrate that radiopathomic maps of epithelium density are sensitive to the pathologist annotating the dataset; however, it is unclear if these differences are clinically significant. The consensus model produced the best maps, matched the performance of the best individual model, and outperformed ADC. |
format | Online Article Text |
id | pubmed-7479263 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Society of Photo-Optical Instrumentation Engineers |
record_format | MEDLINE/PubMed |
spelling | pubmed-74792632021-09-09 Radio-pathomic mapping model generated using annotations from five pathologists reliably distinguishes high-grade prostate cancer McGarry, Sean D. Bukowy, John D. Iczkowski, Kenneth A. Lowman, Allison K. Brehler, Michael Bobholz, Samuel Nencka, Andrew Barrington, Alex Jacobsohn, Kenneth Unteriner, Jackson Duvnjak, Petar Griffin, Michael Hohenwalter, Mark Keuter, Tucker Huang, Wei Antic, Tatjana Paner, Gladell Palangmonthip, Watchareepohn Banerjee, Anjishnu LaViolette, Peter S. J Med Imaging (Bellingham) Computer-Aided Diagnosis Purpose: Our study predictively maps epithelium density in magnetic resonance imaging (MRI) space while varying the ground truth labels provided by five pathologists to quantify the downstream effects of interobserver variability. Approach: Clinical imaging and postsurgical tissue from 48 recruited prospective patients were used in our study. Tissue was sliced to match the MRI orientation and whole-mount slides were stained and digitized. Data from 28 patients ([Formula: see text] slides) were sent to five pathologists to be annotated. Slides from the remaining 20 patients ([Formula: see text] slides) were annotated by one of the five pathologists. Interpathologist variability was measured using Krippendorff’s alpha. Pathologist-specific radiopathomic mapping models were trained using a partial least-squares regression using MRI values to predict epithelium density, a known marker for disease severity. An analysis of variance characterized intermodel means difference in epithelium density. A consensus model was created and evaluated using a receiver operator characteristic classifying high grade versus low grade and benign, and was statistically compared to apparent diffusion coefficient (ADC). Results: Interobserver variability ranged from low to acceptable agreement (0.31 to 0.69). There was a statistically significant difference in mean predicted epithelium density values ([Formula: see text]) between the five models. The consensus model outperformed ADC (areas under the curve = 0.80 and 0.71, respectively, [Formula: see text]). Conclusion: We demonstrate that radiopathomic maps of epithelium density are sensitive to the pathologist annotating the dataset; however, it is unclear if these differences are clinically significant. The consensus model produced the best maps, matched the performance of the best individual model, and outperformed ADC. Society of Photo-Optical Instrumentation Engineers 2020-09-09 2020-09 /pmc/articles/PMC7479263/ /pubmed/32923510 http://dx.doi.org/10.1117/1.JMI.7.5.054501 Text en © 2020 The Authors https://creativecommons.org/licenses/by/4.0/ Published by SPIE under a Creative Commons Attribution 4.0 Unported License. Distribution or reproduction of this work in whole or in part requires full attribution of the original publication, including its DOI. |
spellingShingle | Computer-Aided Diagnosis McGarry, Sean D. Bukowy, John D. Iczkowski, Kenneth A. Lowman, Allison K. Brehler, Michael Bobholz, Samuel Nencka, Andrew Barrington, Alex Jacobsohn, Kenneth Unteriner, Jackson Duvnjak, Petar Griffin, Michael Hohenwalter, Mark Keuter, Tucker Huang, Wei Antic, Tatjana Paner, Gladell Palangmonthip, Watchareepohn Banerjee, Anjishnu LaViolette, Peter S. Radio-pathomic mapping model generated using annotations from five pathologists reliably distinguishes high-grade prostate cancer |
title | Radio-pathomic mapping model generated using annotations from five pathologists reliably distinguishes high-grade prostate cancer |
title_full | Radio-pathomic mapping model generated using annotations from five pathologists reliably distinguishes high-grade prostate cancer |
title_fullStr | Radio-pathomic mapping model generated using annotations from five pathologists reliably distinguishes high-grade prostate cancer |
title_full_unstemmed | Radio-pathomic mapping model generated using annotations from five pathologists reliably distinguishes high-grade prostate cancer |
title_short | Radio-pathomic mapping model generated using annotations from five pathologists reliably distinguishes high-grade prostate cancer |
title_sort | radio-pathomic mapping model generated using annotations from five pathologists reliably distinguishes high-grade prostate cancer |
topic | Computer-Aided Diagnosis |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7479263/ https://www.ncbi.nlm.nih.gov/pubmed/32923510 http://dx.doi.org/10.1117/1.JMI.7.5.054501 |
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