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Classification performance of administrative coding data for detection of invasive fungal infection in paediatric cancer patients

BACKGROUND: Invasive fungal infection (IFI) detection requires application of complex case definitions by trained staff. Administrative coding data (ICD-10-AM) may provide a simplified method for IFI surveillance, but accuracy of case ascertainment in children with cancer is unknown. OBJECTIVE: To d...

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Autores principales: Valentine, Jake C., Worth, Leon J., Verspoor, Karin M., Hall, Lisa, Yeoh, Daniel K., Thursky, Karin A., Clark, Julia E., Haeusler, Gabrielle M.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7480858/
https://www.ncbi.nlm.nih.gov/pubmed/32903280
http://dx.doi.org/10.1371/journal.pone.0238889
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author Valentine, Jake C.
Worth, Leon J.
Verspoor, Karin M.
Hall, Lisa
Yeoh, Daniel K.
Thursky, Karin A.
Clark, Julia E.
Haeusler, Gabrielle M.
author_facet Valentine, Jake C.
Worth, Leon J.
Verspoor, Karin M.
Hall, Lisa
Yeoh, Daniel K.
Thursky, Karin A.
Clark, Julia E.
Haeusler, Gabrielle M.
author_sort Valentine, Jake C.
collection PubMed
description BACKGROUND: Invasive fungal infection (IFI) detection requires application of complex case definitions by trained staff. Administrative coding data (ICD-10-AM) may provide a simplified method for IFI surveillance, but accuracy of case ascertainment in children with cancer is unknown. OBJECTIVE: To determine the classification performance of ICD-10-AM codes for detecting IFI using a gold-standard dataset (r-TERIFIC) of confirmed IFIs in paediatric cancer patients at a quaternary referral centre (Royal Children’s Hospital) in Victoria, Australia from 1(st) April 2004 to 31(st) December 2013. METHODS: ICD-10-AM codes denoting IFI in paediatric patients (<18-years) with haematologic or solid tumour malignancies were extracted from the Victorian Admitted Episodes Dataset and linked to the r-TERIFIC dataset. Sensitivity, positive predictive value (PPV) and the F(1) scores of the ICD-10-AM codes were calculated. RESULTS: Of 1,671 evaluable patients, 113 (6.76%) had confirmed IFI diagnoses according to gold-standard criteria, while 114 (6.82%) cases were identified using the codes. Of the clinical IFI cases, 68 were in receipt of ≥1 ICD-10-AM code(s) for IFI, corresponding to an overall sensitivity, PPV and F(1) score of 60%, respectively. Sensitivity was highest for proven IFI (77% [95% CI: 58–90]; F(1) = 47%) and invasive candidiasis (83% [95% CI: 61–95]; F(1) = 76%) and lowest for other/unspecified IFI (20% [95% CI: 5.05–72%]; F(1) = 5.00%). The most frequent misclassification was coding of invasive aspergillosis as invasive candidiasis. CONCLUSION: ICD-10-AM codes demonstrate moderate sensitivity and PPV to detect IFI in children with cancer. However, specific subsets of proven IFI and invasive candidiasis (codes B37.x) are more accurately coded.
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spelling pubmed-74808582020-09-18 Classification performance of administrative coding data for detection of invasive fungal infection in paediatric cancer patients Valentine, Jake C. Worth, Leon J. Verspoor, Karin M. Hall, Lisa Yeoh, Daniel K. Thursky, Karin A. Clark, Julia E. Haeusler, Gabrielle M. PLoS One Research Article BACKGROUND: Invasive fungal infection (IFI) detection requires application of complex case definitions by trained staff. Administrative coding data (ICD-10-AM) may provide a simplified method for IFI surveillance, but accuracy of case ascertainment in children with cancer is unknown. OBJECTIVE: To determine the classification performance of ICD-10-AM codes for detecting IFI using a gold-standard dataset (r-TERIFIC) of confirmed IFIs in paediatric cancer patients at a quaternary referral centre (Royal Children’s Hospital) in Victoria, Australia from 1(st) April 2004 to 31(st) December 2013. METHODS: ICD-10-AM codes denoting IFI in paediatric patients (<18-years) with haematologic or solid tumour malignancies were extracted from the Victorian Admitted Episodes Dataset and linked to the r-TERIFIC dataset. Sensitivity, positive predictive value (PPV) and the F(1) scores of the ICD-10-AM codes were calculated. RESULTS: Of 1,671 evaluable patients, 113 (6.76%) had confirmed IFI diagnoses according to gold-standard criteria, while 114 (6.82%) cases were identified using the codes. Of the clinical IFI cases, 68 were in receipt of ≥1 ICD-10-AM code(s) for IFI, corresponding to an overall sensitivity, PPV and F(1) score of 60%, respectively. Sensitivity was highest for proven IFI (77% [95% CI: 58–90]; F(1) = 47%) and invasive candidiasis (83% [95% CI: 61–95]; F(1) = 76%) and lowest for other/unspecified IFI (20% [95% CI: 5.05–72%]; F(1) = 5.00%). The most frequent misclassification was coding of invasive aspergillosis as invasive candidiasis. CONCLUSION: ICD-10-AM codes demonstrate moderate sensitivity and PPV to detect IFI in children with cancer. However, specific subsets of proven IFI and invasive candidiasis (codes B37.x) are more accurately coded. Public Library of Science 2020-09-09 /pmc/articles/PMC7480858/ /pubmed/32903280 http://dx.doi.org/10.1371/journal.pone.0238889 Text en © 2020 Valentine et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Valentine, Jake C.
Worth, Leon J.
Verspoor, Karin M.
Hall, Lisa
Yeoh, Daniel K.
Thursky, Karin A.
Clark, Julia E.
Haeusler, Gabrielle M.
Classification performance of administrative coding data for detection of invasive fungal infection in paediatric cancer patients
title Classification performance of administrative coding data for detection of invasive fungal infection in paediatric cancer patients
title_full Classification performance of administrative coding data for detection of invasive fungal infection in paediatric cancer patients
title_fullStr Classification performance of administrative coding data for detection of invasive fungal infection in paediatric cancer patients
title_full_unstemmed Classification performance of administrative coding data for detection of invasive fungal infection in paediatric cancer patients
title_short Classification performance of administrative coding data for detection of invasive fungal infection in paediatric cancer patients
title_sort classification performance of administrative coding data for detection of invasive fungal infection in paediatric cancer patients
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7480858/
https://www.ncbi.nlm.nih.gov/pubmed/32903280
http://dx.doi.org/10.1371/journal.pone.0238889
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