Cargando…
Unification of aggregate growth models by emergence from cellular and intracellular mechanisms
Multicellular aggregate growth is regulated by nutrient availability and removal of metabolites, but the specifics of growth dynamics are dependent on cell type and environment. Classical models of growth are based on differential equations. While in some cases these classical models match experimen...
Autores principales: | , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
The Royal Society
2020
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7481681/ https://www.ncbi.nlm.nih.gov/pubmed/32968501 http://dx.doi.org/10.1098/rsos.192148 |
_version_ | 1783580656239902720 |
---|---|
author | Sego, T. J. Glazier, James A. Tovar, Andres |
author_facet | Sego, T. J. Glazier, James A. Tovar, Andres |
author_sort | Sego, T. J. |
collection | PubMed |
description | Multicellular aggregate growth is regulated by nutrient availability and removal of metabolites, but the specifics of growth dynamics are dependent on cell type and environment. Classical models of growth are based on differential equations. While in some cases these classical models match experimental observations, they can only predict growth of a limited number of cell types and so can only be selectively applied. Currently, no classical model provides a general mathematical representation of growth for any cell type and environment. This discrepancy limits their range of applications, which a general modelling framework can enhance. In this work, a hybrid cellular Potts model is used to explain the discrepancy between classical models as emergent behaviours from the same mathematical system. Intracellular processes are described using probability distributions of local chemical conditions for proliferation and death and simulated. By fitting simulation results to a generalization of the classical models, their emergence is demonstrated. Parameter variations elucidate how aggregate growth may behave like one classical growth model or another. Three classical growth model fits were tested, and emergence of the Gompertz equation was demonstrated. Effects of shape changes are demonstrated, which are significant for final aggregate size and growth rate, and occur stochastically. |
format | Online Article Text |
id | pubmed-7481681 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | The Royal Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-74816812020-09-22 Unification of aggregate growth models by emergence from cellular and intracellular mechanisms Sego, T. J. Glazier, James A. Tovar, Andres R Soc Open Sci Physics and Biophysics Multicellular aggregate growth is regulated by nutrient availability and removal of metabolites, but the specifics of growth dynamics are dependent on cell type and environment. Classical models of growth are based on differential equations. While in some cases these classical models match experimental observations, they can only predict growth of a limited number of cell types and so can only be selectively applied. Currently, no classical model provides a general mathematical representation of growth for any cell type and environment. This discrepancy limits their range of applications, which a general modelling framework can enhance. In this work, a hybrid cellular Potts model is used to explain the discrepancy between classical models as emergent behaviours from the same mathematical system. Intracellular processes are described using probability distributions of local chemical conditions for proliferation and death and simulated. By fitting simulation results to a generalization of the classical models, their emergence is demonstrated. Parameter variations elucidate how aggregate growth may behave like one classical growth model or another. Three classical growth model fits were tested, and emergence of the Gompertz equation was demonstrated. Effects of shape changes are demonstrated, which are significant for final aggregate size and growth rate, and occur stochastically. The Royal Society 2020-08-12 /pmc/articles/PMC7481681/ /pubmed/32968501 http://dx.doi.org/10.1098/rsos.192148 Text en © 2020 The Authors. http://creativecommons.org/licenses/by/4.0/ http://creativecommons.org/licenses/by/4.0/http://creativecommons.org/licenses/by/4.0/Published by the Royal Society under the terms of the Creative Commons Attribution License http://creativecommons.org/licenses/by/4.0/, which permits unrestricted use, provided the original author and source are credited. |
spellingShingle | Physics and Biophysics Sego, T. J. Glazier, James A. Tovar, Andres Unification of aggregate growth models by emergence from cellular and intracellular mechanisms |
title | Unification of aggregate growth models by emergence from cellular and intracellular mechanisms |
title_full | Unification of aggregate growth models by emergence from cellular and intracellular mechanisms |
title_fullStr | Unification of aggregate growth models by emergence from cellular and intracellular mechanisms |
title_full_unstemmed | Unification of aggregate growth models by emergence from cellular and intracellular mechanisms |
title_short | Unification of aggregate growth models by emergence from cellular and intracellular mechanisms |
title_sort | unification of aggregate growth models by emergence from cellular and intracellular mechanisms |
topic | Physics and Biophysics |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7481681/ https://www.ncbi.nlm.nih.gov/pubmed/32968501 http://dx.doi.org/10.1098/rsos.192148 |
work_keys_str_mv | AT segotj unificationofaggregategrowthmodelsbyemergencefromcellularandintracellularmechanisms AT glazierjamesa unificationofaggregategrowthmodelsbyemergencefromcellularandintracellularmechanisms AT tovarandres unificationofaggregategrowthmodelsbyemergencefromcellularandintracellularmechanisms |