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Comprehensive Analysis of Differentially Expressed circRNAs Reveals a Colorectal Cancer-Related ceRNA Network

The morbidity and mortality of colorectal cancer (CRC) remained to be very high worldwide. Recently, circRNAs had been revealed to have a crucial role in cancer prognosis and progression. Numerous researches have shown that RNA sequencing technology and in silico method were widely used to identify...

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Detalles Bibliográficos
Autores principales: Que, Feng, Wang, Hua, Luo, Yi, Cui, Li, Wei, Lanfu, Xi, Zhaohong, Lin, Qiu, Ge, Yongsheng, Wang, Wei
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Hindawi 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7481959/
https://www.ncbi.nlm.nih.gov/pubmed/32952599
http://dx.doi.org/10.1155/2020/7159340
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author Que, Feng
Wang, Hua
Luo, Yi
Cui, Li
Wei, Lanfu
Xi, Zhaohong
Lin, Qiu
Ge, Yongsheng
Wang, Wei
author_facet Que, Feng
Wang, Hua
Luo, Yi
Cui, Li
Wei, Lanfu
Xi, Zhaohong
Lin, Qiu
Ge, Yongsheng
Wang, Wei
author_sort Que, Feng
collection PubMed
description The morbidity and mortality of colorectal cancer (CRC) remained to be very high worldwide. Recently, circRNAs had been revealed to have a crucial role in cancer prognosis and progression. Numerous researches have shown that RNA sequencing technology and in silico method were widely used to identify pathogenic mechanisms and uncover promising targets for diagnosis and therapy. In this study, these methods were analyzed to obtain differentially expressed circRNAs (DECs). We identified upregulated 316 circRNAs and reduced 76 circRNAs in CRC samples, in comparison with those in normal tissues. In addition, a competitive endogenous network of circRNA-miRNA-mRNA was established to predict the mechanisms of circRNAs. Bioinformatics analysis revealed that these circRNAs participated in metabolism regulation and cell cycle progression. Of note, we observed the hub genes and miRNAs in this ceRNA network were associated with the survival time in CRC. We think this study could provide potential prognostic biomarkers and targets for CRC.
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spelling pubmed-74819592020-09-18 Comprehensive Analysis of Differentially Expressed circRNAs Reveals a Colorectal Cancer-Related ceRNA Network Que, Feng Wang, Hua Luo, Yi Cui, Li Wei, Lanfu Xi, Zhaohong Lin, Qiu Ge, Yongsheng Wang, Wei Comput Math Methods Med Research Article The morbidity and mortality of colorectal cancer (CRC) remained to be very high worldwide. Recently, circRNAs had been revealed to have a crucial role in cancer prognosis and progression. Numerous researches have shown that RNA sequencing technology and in silico method were widely used to identify pathogenic mechanisms and uncover promising targets for diagnosis and therapy. In this study, these methods were analyzed to obtain differentially expressed circRNAs (DECs). We identified upregulated 316 circRNAs and reduced 76 circRNAs in CRC samples, in comparison with those in normal tissues. In addition, a competitive endogenous network of circRNA-miRNA-mRNA was established to predict the mechanisms of circRNAs. Bioinformatics analysis revealed that these circRNAs participated in metabolism regulation and cell cycle progression. Of note, we observed the hub genes and miRNAs in this ceRNA network were associated with the survival time in CRC. We think this study could provide potential prognostic biomarkers and targets for CRC. Hindawi 2020-09-01 /pmc/articles/PMC7481959/ /pubmed/32952599 http://dx.doi.org/10.1155/2020/7159340 Text en Copyright © 2020 Feng Que et al. http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Article
Que, Feng
Wang, Hua
Luo, Yi
Cui, Li
Wei, Lanfu
Xi, Zhaohong
Lin, Qiu
Ge, Yongsheng
Wang, Wei
Comprehensive Analysis of Differentially Expressed circRNAs Reveals a Colorectal Cancer-Related ceRNA Network
title Comprehensive Analysis of Differentially Expressed circRNAs Reveals a Colorectal Cancer-Related ceRNA Network
title_full Comprehensive Analysis of Differentially Expressed circRNAs Reveals a Colorectal Cancer-Related ceRNA Network
title_fullStr Comprehensive Analysis of Differentially Expressed circRNAs Reveals a Colorectal Cancer-Related ceRNA Network
title_full_unstemmed Comprehensive Analysis of Differentially Expressed circRNAs Reveals a Colorectal Cancer-Related ceRNA Network
title_short Comprehensive Analysis of Differentially Expressed circRNAs Reveals a Colorectal Cancer-Related ceRNA Network
title_sort comprehensive analysis of differentially expressed circrnas reveals a colorectal cancer-related cerna network
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7481959/
https://www.ncbi.nlm.nih.gov/pubmed/32952599
http://dx.doi.org/10.1155/2020/7159340
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