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Comprehensive Analysis of Differentially Expressed circRNAs Reveals a Colorectal Cancer-Related ceRNA Network
The morbidity and mortality of colorectal cancer (CRC) remained to be very high worldwide. Recently, circRNAs had been revealed to have a crucial role in cancer prognosis and progression. Numerous researches have shown that RNA sequencing technology and in silico method were widely used to identify...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Hindawi
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7481959/ https://www.ncbi.nlm.nih.gov/pubmed/32952599 http://dx.doi.org/10.1155/2020/7159340 |
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author | Que, Feng Wang, Hua Luo, Yi Cui, Li Wei, Lanfu Xi, Zhaohong Lin, Qiu Ge, Yongsheng Wang, Wei |
author_facet | Que, Feng Wang, Hua Luo, Yi Cui, Li Wei, Lanfu Xi, Zhaohong Lin, Qiu Ge, Yongsheng Wang, Wei |
author_sort | Que, Feng |
collection | PubMed |
description | The morbidity and mortality of colorectal cancer (CRC) remained to be very high worldwide. Recently, circRNAs had been revealed to have a crucial role in cancer prognosis and progression. Numerous researches have shown that RNA sequencing technology and in silico method were widely used to identify pathogenic mechanisms and uncover promising targets for diagnosis and therapy. In this study, these methods were analyzed to obtain differentially expressed circRNAs (DECs). We identified upregulated 316 circRNAs and reduced 76 circRNAs in CRC samples, in comparison with those in normal tissues. In addition, a competitive endogenous network of circRNA-miRNA-mRNA was established to predict the mechanisms of circRNAs. Bioinformatics analysis revealed that these circRNAs participated in metabolism regulation and cell cycle progression. Of note, we observed the hub genes and miRNAs in this ceRNA network were associated with the survival time in CRC. We think this study could provide potential prognostic biomarkers and targets for CRC. |
format | Online Article Text |
id | pubmed-7481959 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Hindawi |
record_format | MEDLINE/PubMed |
spelling | pubmed-74819592020-09-18 Comprehensive Analysis of Differentially Expressed circRNAs Reveals a Colorectal Cancer-Related ceRNA Network Que, Feng Wang, Hua Luo, Yi Cui, Li Wei, Lanfu Xi, Zhaohong Lin, Qiu Ge, Yongsheng Wang, Wei Comput Math Methods Med Research Article The morbidity and mortality of colorectal cancer (CRC) remained to be very high worldwide. Recently, circRNAs had been revealed to have a crucial role in cancer prognosis and progression. Numerous researches have shown that RNA sequencing technology and in silico method were widely used to identify pathogenic mechanisms and uncover promising targets for diagnosis and therapy. In this study, these methods were analyzed to obtain differentially expressed circRNAs (DECs). We identified upregulated 316 circRNAs and reduced 76 circRNAs in CRC samples, in comparison with those in normal tissues. In addition, a competitive endogenous network of circRNA-miRNA-mRNA was established to predict the mechanisms of circRNAs. Bioinformatics analysis revealed that these circRNAs participated in metabolism regulation and cell cycle progression. Of note, we observed the hub genes and miRNAs in this ceRNA network were associated with the survival time in CRC. We think this study could provide potential prognostic biomarkers and targets for CRC. Hindawi 2020-09-01 /pmc/articles/PMC7481959/ /pubmed/32952599 http://dx.doi.org/10.1155/2020/7159340 Text en Copyright © 2020 Feng Que et al. http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Research Article Que, Feng Wang, Hua Luo, Yi Cui, Li Wei, Lanfu Xi, Zhaohong Lin, Qiu Ge, Yongsheng Wang, Wei Comprehensive Analysis of Differentially Expressed circRNAs Reveals a Colorectal Cancer-Related ceRNA Network |
title | Comprehensive Analysis of Differentially Expressed circRNAs Reveals a Colorectal Cancer-Related ceRNA Network |
title_full | Comprehensive Analysis of Differentially Expressed circRNAs Reveals a Colorectal Cancer-Related ceRNA Network |
title_fullStr | Comprehensive Analysis of Differentially Expressed circRNAs Reveals a Colorectal Cancer-Related ceRNA Network |
title_full_unstemmed | Comprehensive Analysis of Differentially Expressed circRNAs Reveals a Colorectal Cancer-Related ceRNA Network |
title_short | Comprehensive Analysis of Differentially Expressed circRNAs Reveals a Colorectal Cancer-Related ceRNA Network |
title_sort | comprehensive analysis of differentially expressed circrnas reveals a colorectal cancer-related cerna network |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7481959/ https://www.ncbi.nlm.nih.gov/pubmed/32952599 http://dx.doi.org/10.1155/2020/7159340 |
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