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The Polygenic and Monogenic Basis of Blood Traits and Diseases
Blood cells play essential roles in human health, underpinning physiological processes such as immunity, oxygen transport, and clotting, which when perturbed cause a significant global health burden. Here we integrate data from UK Biobank and a large-scale international collaborative effort, includi...
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Cell Press
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7482360/ https://www.ncbi.nlm.nih.gov/pubmed/32888494 http://dx.doi.org/10.1016/j.cell.2020.08.008 |
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author | Vuckovic, Dragana Bao, Erik L. Akbari, Parsa Lareau, Caleb A. Mousas, Abdou Jiang, Tao Chen, Ming-Huei Raffield, Laura M. Tardaguila, Manuel Huffman, Jennifer E. Ritchie, Scott C. Megy, Karyn Ponstingl, Hannes Penkett, Christopher J. Albers, Patrick K. Wigdor, Emilie M. Sakaue, Saori Moscati, Arden Manansala, Regina Lo, Ken Sin Qian, Huijun Akiyama, Masato Bartz, Traci M. Ben-Shlomo, Yoav Beswick, Andrew Bork-Jensen, Jette Bottinger, Erwin P. Brody, Jennifer A. van Rooij, Frank J.A. Chitrala, Kumaraswamy N. Wilson, Peter W.F. Choquet, Hélène Danesh, John Di Angelantonio, Emanuele Dimou, Niki Ding, Jingzhong Elliott, Paul Esko, Tõnu Evans, Michele K. Felix, Stephan B. Floyd, James S. Broer, Linda Grarup, Niels Guo, Michael H. Guo, Qi Greinacher, Andreas Haessler, Jeff Hansen, Torben Howson, Joanna M.M. Huang, Wei Jorgenson, Eric Kacprowski, Tim Kähönen, Mika Kamatani, Yoichiro Kanai, Masahiro Karthikeyan, Savita Koskeridis, Fotios Lange, Leslie A. Lehtimäki, Terho Linneberg, Allan Liu, Yongmei Lyytikäinen, Leo-Pekka Manichaikul, Ani Matsuda, Koichi Mohlke, Karen L. Mononen, Nina Murakami, Yoshinori Nadkarni, Girish N. Nikus, Kjell Pankratz, Nathan Pedersen, Oluf Preuss, Michael Psaty, Bruce M. Raitakari, Olli T. Rich, Stephen S. Rodriguez, Benjamin A.T. Rosen, Jonathan D. Rotter, Jerome I. Schubert, Petra Spracklen, Cassandra N. Surendran, Praveen Tang, Hua Tardif, Jean-Claude Ghanbari, Mohsen Völker, Uwe Völzke, Henry Watkins, Nicholas A. Weiss, Stefan Cai, Na Kundu, Kousik Watt, Stephen B. Walter, Klaudia Zonderman, Alan B. Cho, Kelly Li, Yun Loos, Ruth J.F. Knight, Julian C. Georges, Michel Stegle, Oliver Evangelou, Evangelos Okada, Yukinori Roberts, David J. Inouye, Michael Johnson, Andrew D. Auer, Paul L. Astle, William J. Reiner, Alexander P. Butterworth, Adam S. Ouwehand, Willem H. Lettre, Guillaume Sankaran, Vijay G. Soranzo, Nicole |
author_facet | Vuckovic, Dragana Bao, Erik L. Akbari, Parsa Lareau, Caleb A. Mousas, Abdou Jiang, Tao Chen, Ming-Huei Raffield, Laura M. Tardaguila, Manuel Huffman, Jennifer E. Ritchie, Scott C. Megy, Karyn Ponstingl, Hannes Penkett, Christopher J. Albers, Patrick K. Wigdor, Emilie M. Sakaue, Saori Moscati, Arden Manansala, Regina Lo, Ken Sin Qian, Huijun Akiyama, Masato Bartz, Traci M. Ben-Shlomo, Yoav Beswick, Andrew Bork-Jensen, Jette Bottinger, Erwin P. Brody, Jennifer A. van Rooij, Frank J.A. Chitrala, Kumaraswamy N. Wilson, Peter W.F. Choquet, Hélène Danesh, John Di Angelantonio, Emanuele Dimou, Niki Ding, Jingzhong Elliott, Paul Esko, Tõnu Evans, Michele K. Felix, Stephan B. Floyd, James S. Broer, Linda Grarup, Niels Guo, Michael H. Guo, Qi Greinacher, Andreas Haessler, Jeff Hansen, Torben Howson, Joanna M.M. Huang, Wei Jorgenson, Eric Kacprowski, Tim Kähönen, Mika Kamatani, Yoichiro Kanai, Masahiro Karthikeyan, Savita Koskeridis, Fotios Lange, Leslie A. Lehtimäki, Terho Linneberg, Allan Liu, Yongmei Lyytikäinen, Leo-Pekka Manichaikul, Ani Matsuda, Koichi Mohlke, Karen L. Mononen, Nina Murakami, Yoshinori Nadkarni, Girish N. Nikus, Kjell Pankratz, Nathan Pedersen, Oluf Preuss, Michael Psaty, Bruce M. Raitakari, Olli T. Rich, Stephen S. Rodriguez, Benjamin A.T. Rosen, Jonathan D. Rotter, Jerome I. Schubert, Petra Spracklen, Cassandra N. Surendran, Praveen Tang, Hua Tardif, Jean-Claude Ghanbari, Mohsen Völker, Uwe Völzke, Henry Watkins, Nicholas A. Weiss, Stefan Cai, Na Kundu, Kousik Watt, Stephen B. Walter, Klaudia Zonderman, Alan B. Cho, Kelly Li, Yun Loos, Ruth J.F. Knight, Julian C. Georges, Michel Stegle, Oliver Evangelou, Evangelos Okada, Yukinori Roberts, David J. Inouye, Michael Johnson, Andrew D. Auer, Paul L. Astle, William J. Reiner, Alexander P. Butterworth, Adam S. Ouwehand, Willem H. Lettre, Guillaume Sankaran, Vijay G. Soranzo, Nicole |
author_sort | Vuckovic, Dragana |
collection | PubMed |
description | Blood cells play essential roles in human health, underpinning physiological processes such as immunity, oxygen transport, and clotting, which when perturbed cause a significant global health burden. Here we integrate data from UK Biobank and a large-scale international collaborative effort, including data for 563,085 European ancestry participants, and discover 5,106 new genetic variants independently associated with 29 blood cell phenotypes covering a range of variation impacting hematopoiesis. We holistically characterize the genetic architecture of hematopoiesis, assess the relevance of the omnigenic model to blood cell phenotypes, delineate relevant hematopoietic cell states influenced by regulatory genetic variants and gene networks, identify novel splice-altering variants mediating the associations, and assess the polygenic prediction potential for blood traits and clinical disorders at the interface of complex and Mendelian genetics. These results show the power of large-scale blood cell trait GWAS to interrogate clinically meaningful variants across a wide allelic spectrum of human variation. |
format | Online Article Text |
id | pubmed-7482360 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Cell Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-74823602020-09-17 The Polygenic and Monogenic Basis of Blood Traits and Diseases Vuckovic, Dragana Bao, Erik L. Akbari, Parsa Lareau, Caleb A. Mousas, Abdou Jiang, Tao Chen, Ming-Huei Raffield, Laura M. Tardaguila, Manuel Huffman, Jennifer E. Ritchie, Scott C. Megy, Karyn Ponstingl, Hannes Penkett, Christopher J. Albers, Patrick K. Wigdor, Emilie M. Sakaue, Saori Moscati, Arden Manansala, Regina Lo, Ken Sin Qian, Huijun Akiyama, Masato Bartz, Traci M. Ben-Shlomo, Yoav Beswick, Andrew Bork-Jensen, Jette Bottinger, Erwin P. Brody, Jennifer A. van Rooij, Frank J.A. Chitrala, Kumaraswamy N. Wilson, Peter W.F. Choquet, Hélène Danesh, John Di Angelantonio, Emanuele Dimou, Niki Ding, Jingzhong Elliott, Paul Esko, Tõnu Evans, Michele K. Felix, Stephan B. Floyd, James S. Broer, Linda Grarup, Niels Guo, Michael H. Guo, Qi Greinacher, Andreas Haessler, Jeff Hansen, Torben Howson, Joanna M.M. Huang, Wei Jorgenson, Eric Kacprowski, Tim Kähönen, Mika Kamatani, Yoichiro Kanai, Masahiro Karthikeyan, Savita Koskeridis, Fotios Lange, Leslie A. Lehtimäki, Terho Linneberg, Allan Liu, Yongmei Lyytikäinen, Leo-Pekka Manichaikul, Ani Matsuda, Koichi Mohlke, Karen L. Mononen, Nina Murakami, Yoshinori Nadkarni, Girish N. Nikus, Kjell Pankratz, Nathan Pedersen, Oluf Preuss, Michael Psaty, Bruce M. Raitakari, Olli T. Rich, Stephen S. Rodriguez, Benjamin A.T. Rosen, Jonathan D. Rotter, Jerome I. Schubert, Petra Spracklen, Cassandra N. Surendran, Praveen Tang, Hua Tardif, Jean-Claude Ghanbari, Mohsen Völker, Uwe Völzke, Henry Watkins, Nicholas A. Weiss, Stefan Cai, Na Kundu, Kousik Watt, Stephen B. Walter, Klaudia Zonderman, Alan B. Cho, Kelly Li, Yun Loos, Ruth J.F. Knight, Julian C. Georges, Michel Stegle, Oliver Evangelou, Evangelos Okada, Yukinori Roberts, David J. Inouye, Michael Johnson, Andrew D. Auer, Paul L. Astle, William J. Reiner, Alexander P. Butterworth, Adam S. Ouwehand, Willem H. Lettre, Guillaume Sankaran, Vijay G. Soranzo, Nicole Cell Article Blood cells play essential roles in human health, underpinning physiological processes such as immunity, oxygen transport, and clotting, which when perturbed cause a significant global health burden. Here we integrate data from UK Biobank and a large-scale international collaborative effort, including data for 563,085 European ancestry participants, and discover 5,106 new genetic variants independently associated with 29 blood cell phenotypes covering a range of variation impacting hematopoiesis. We holistically characterize the genetic architecture of hematopoiesis, assess the relevance of the omnigenic model to blood cell phenotypes, delineate relevant hematopoietic cell states influenced by regulatory genetic variants and gene networks, identify novel splice-altering variants mediating the associations, and assess the polygenic prediction potential for blood traits and clinical disorders at the interface of complex and Mendelian genetics. These results show the power of large-scale blood cell trait GWAS to interrogate clinically meaningful variants across a wide allelic spectrum of human variation. Cell Press 2020-09-03 /pmc/articles/PMC7482360/ /pubmed/32888494 http://dx.doi.org/10.1016/j.cell.2020.08.008 Text en © 2020 The Authors http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Vuckovic, Dragana Bao, Erik L. Akbari, Parsa Lareau, Caleb A. Mousas, Abdou Jiang, Tao Chen, Ming-Huei Raffield, Laura M. Tardaguila, Manuel Huffman, Jennifer E. Ritchie, Scott C. Megy, Karyn Ponstingl, Hannes Penkett, Christopher J. Albers, Patrick K. Wigdor, Emilie M. Sakaue, Saori Moscati, Arden Manansala, Regina Lo, Ken Sin Qian, Huijun Akiyama, Masato Bartz, Traci M. Ben-Shlomo, Yoav Beswick, Andrew Bork-Jensen, Jette Bottinger, Erwin P. Brody, Jennifer A. van Rooij, Frank J.A. Chitrala, Kumaraswamy N. Wilson, Peter W.F. Choquet, Hélène Danesh, John Di Angelantonio, Emanuele Dimou, Niki Ding, Jingzhong Elliott, Paul Esko, Tõnu Evans, Michele K. Felix, Stephan B. Floyd, James S. Broer, Linda Grarup, Niels Guo, Michael H. Guo, Qi Greinacher, Andreas Haessler, Jeff Hansen, Torben Howson, Joanna M.M. Huang, Wei Jorgenson, Eric Kacprowski, Tim Kähönen, Mika Kamatani, Yoichiro Kanai, Masahiro Karthikeyan, Savita Koskeridis, Fotios Lange, Leslie A. Lehtimäki, Terho Linneberg, Allan Liu, Yongmei Lyytikäinen, Leo-Pekka Manichaikul, Ani Matsuda, Koichi Mohlke, Karen L. Mononen, Nina Murakami, Yoshinori Nadkarni, Girish N. Nikus, Kjell Pankratz, Nathan Pedersen, Oluf Preuss, Michael Psaty, Bruce M. Raitakari, Olli T. Rich, Stephen S. Rodriguez, Benjamin A.T. Rosen, Jonathan D. Rotter, Jerome I. Schubert, Petra Spracklen, Cassandra N. Surendran, Praveen Tang, Hua Tardif, Jean-Claude Ghanbari, Mohsen Völker, Uwe Völzke, Henry Watkins, Nicholas A. Weiss, Stefan Cai, Na Kundu, Kousik Watt, Stephen B. Walter, Klaudia Zonderman, Alan B. Cho, Kelly Li, Yun Loos, Ruth J.F. Knight, Julian C. Georges, Michel Stegle, Oliver Evangelou, Evangelos Okada, Yukinori Roberts, David J. Inouye, Michael Johnson, Andrew D. Auer, Paul L. Astle, William J. Reiner, Alexander P. Butterworth, Adam S. Ouwehand, Willem H. Lettre, Guillaume Sankaran, Vijay G. Soranzo, Nicole The Polygenic and Monogenic Basis of Blood Traits and Diseases |
title | The Polygenic and Monogenic Basis of Blood Traits and Diseases |
title_full | The Polygenic and Monogenic Basis of Blood Traits and Diseases |
title_fullStr | The Polygenic and Monogenic Basis of Blood Traits and Diseases |
title_full_unstemmed | The Polygenic and Monogenic Basis of Blood Traits and Diseases |
title_short | The Polygenic and Monogenic Basis of Blood Traits and Diseases |
title_sort | polygenic and monogenic basis of blood traits and diseases |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7482360/ https://www.ncbi.nlm.nih.gov/pubmed/32888494 http://dx.doi.org/10.1016/j.cell.2020.08.008 |
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polygenicandmonogenicbasisofbloodtraitsanddiseases AT ghanbarimohsen polygenicandmonogenicbasisofbloodtraitsanddiseases AT volkeruwe polygenicandmonogenicbasisofbloodtraitsanddiseases AT volzkehenry polygenicandmonogenicbasisofbloodtraitsanddiseases AT watkinsnicholasa polygenicandmonogenicbasisofbloodtraitsanddiseases AT weissstefan polygenicandmonogenicbasisofbloodtraitsanddiseases AT polygenicandmonogenicbasisofbloodtraitsanddiseases AT caina polygenicandmonogenicbasisofbloodtraitsanddiseases AT kundukousik polygenicandmonogenicbasisofbloodtraitsanddiseases AT wattstephenb polygenicandmonogenicbasisofbloodtraitsanddiseases AT walterklaudia polygenicandmonogenicbasisofbloodtraitsanddiseases AT zondermanalanb polygenicandmonogenicbasisofbloodtraitsanddiseases AT chokelly polygenicandmonogenicbasisofbloodtraitsanddiseases AT liyun polygenicandmonogenicbasisofbloodtraitsanddiseases AT loosruthjf polygenicandmonogenicbasisofbloodtraitsanddiseases AT knightjulianc polygenicandmonogenicbasisofbloodtraitsanddiseases AT georgesmichel polygenicandmonogenicbasisofbloodtraitsanddiseases AT stegleoliver polygenicandmonogenicbasisofbloodtraitsanddiseases AT evangelouevangelos polygenicandmonogenicbasisofbloodtraitsanddiseases AT okadayukinori polygenicandmonogenicbasisofbloodtraitsanddiseases AT robertsdavidj polygenicandmonogenicbasisofbloodtraitsanddiseases AT inouyemichael polygenicandmonogenicbasisofbloodtraitsanddiseases AT johnsonandrewd polygenicandmonogenicbasisofbloodtraitsanddiseases AT auerpaull polygenicandmonogenicbasisofbloodtraitsanddiseases AT astlewilliamj polygenicandmonogenicbasisofbloodtraitsanddiseases AT reineralexanderp polygenicandmonogenicbasisofbloodtraitsanddiseases AT butterworthadams polygenicandmonogenicbasisofbloodtraitsanddiseases AT ouwehandwillemh polygenicandmonogenicbasisofbloodtraitsanddiseases AT lettreguillaume polygenicandmonogenicbasisofbloodtraitsanddiseases AT sankaranvijayg polygenicandmonogenicbasisofbloodtraitsanddiseases AT soranzonicole polygenicandmonogenicbasisofbloodtraitsanddiseases |