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Genome-Wide Mining of Wheat DUF966 Gene Family Provides New Insights Into Salt Stress Responses

Domain of unknown function (DUF) proteins constitute a great deal of families of functionally uncharacterized proteins in eukaryotes. The DUF966 gene family is found in monocotyledons, dicotyledons, mosses, and other species. However, little is known about the functions of DUF966 genes in wheat (Tri...

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Autores principales: Zhou, Xiaoyi, Zhu, Xiaoguo, Shao, Wenna, Song, Jinghan, Jiang, Wenqiang, He, Yiqin, Yin, Junliang, Ma, Dongfang, Qiao, Yongli
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7483657/
https://www.ncbi.nlm.nih.gov/pubmed/32983219
http://dx.doi.org/10.3389/fpls.2020.569838
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author Zhou, Xiaoyi
Zhu, Xiaoguo
Shao, Wenna
Song, Jinghan
Jiang, Wenqiang
He, Yiqin
Yin, Junliang
Ma, Dongfang
Qiao, Yongli
author_facet Zhou, Xiaoyi
Zhu, Xiaoguo
Shao, Wenna
Song, Jinghan
Jiang, Wenqiang
He, Yiqin
Yin, Junliang
Ma, Dongfang
Qiao, Yongli
author_sort Zhou, Xiaoyi
collection PubMed
description Domain of unknown function (DUF) proteins constitute a great deal of families of functionally uncharacterized proteins in eukaryotes. The DUF966 gene family is found in monocotyledons, dicotyledons, mosses, and other species. However, little is known about the functions of DUF966 genes in wheat (Triticum aestivum L.). In this study, we identified and characterized the TaDUF966 gene family members in wheat by in silico analysis. A total of 28 TaDUF966 proteins were identified in wheat. Phylogenetic analysis divided these proteins into two groups (Groups I and II). Proteins in each group showed a highly conserved DUF966 domain and conserved motif distribution, implying their functional conservation. Analysis of gene expression profiling data showed that some TaDUF966 genes were induced by salt stress. We further confirmed the role of TaDUF966-9B in salt stress using virus induced gene silencing (VIGS) assay. Compared with the empty vector control, the TaDUF966-9B knockdown plants exhibited severe leaf curling at 10 days post-inoculation with BSMV under salt stress, suggesting that TaDUF966 genes play a vital role in salt stress tolerance in wheat. Taken together, these results expand our knowledge of the evolution of the DUF966 gene family in wheat and promote the potential application of these genes in wheat genetic improvement.
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spelling pubmed-74836572020-09-26 Genome-Wide Mining of Wheat DUF966 Gene Family Provides New Insights Into Salt Stress Responses Zhou, Xiaoyi Zhu, Xiaoguo Shao, Wenna Song, Jinghan Jiang, Wenqiang He, Yiqin Yin, Junliang Ma, Dongfang Qiao, Yongli Front Plant Sci Plant Science Domain of unknown function (DUF) proteins constitute a great deal of families of functionally uncharacterized proteins in eukaryotes. The DUF966 gene family is found in monocotyledons, dicotyledons, mosses, and other species. However, little is known about the functions of DUF966 genes in wheat (Triticum aestivum L.). In this study, we identified and characterized the TaDUF966 gene family members in wheat by in silico analysis. A total of 28 TaDUF966 proteins were identified in wheat. Phylogenetic analysis divided these proteins into two groups (Groups I and II). Proteins in each group showed a highly conserved DUF966 domain and conserved motif distribution, implying their functional conservation. Analysis of gene expression profiling data showed that some TaDUF966 genes were induced by salt stress. We further confirmed the role of TaDUF966-9B in salt stress using virus induced gene silencing (VIGS) assay. Compared with the empty vector control, the TaDUF966-9B knockdown plants exhibited severe leaf curling at 10 days post-inoculation with BSMV under salt stress, suggesting that TaDUF966 genes play a vital role in salt stress tolerance in wheat. Taken together, these results expand our knowledge of the evolution of the DUF966 gene family in wheat and promote the potential application of these genes in wheat genetic improvement. Frontiers Media S.A. 2020-08-28 /pmc/articles/PMC7483657/ /pubmed/32983219 http://dx.doi.org/10.3389/fpls.2020.569838 Text en Copyright © 2020 Zhou, Zhu, Shao, Song, Jiang, He, Yin, Ma and Qiao http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Plant Science
Zhou, Xiaoyi
Zhu, Xiaoguo
Shao, Wenna
Song, Jinghan
Jiang, Wenqiang
He, Yiqin
Yin, Junliang
Ma, Dongfang
Qiao, Yongli
Genome-Wide Mining of Wheat DUF966 Gene Family Provides New Insights Into Salt Stress Responses
title Genome-Wide Mining of Wheat DUF966 Gene Family Provides New Insights Into Salt Stress Responses
title_full Genome-Wide Mining of Wheat DUF966 Gene Family Provides New Insights Into Salt Stress Responses
title_fullStr Genome-Wide Mining of Wheat DUF966 Gene Family Provides New Insights Into Salt Stress Responses
title_full_unstemmed Genome-Wide Mining of Wheat DUF966 Gene Family Provides New Insights Into Salt Stress Responses
title_short Genome-Wide Mining of Wheat DUF966 Gene Family Provides New Insights Into Salt Stress Responses
title_sort genome-wide mining of wheat duf966 gene family provides new insights into salt stress responses
topic Plant Science
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7483657/
https://www.ncbi.nlm.nih.gov/pubmed/32983219
http://dx.doi.org/10.3389/fpls.2020.569838
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