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Catalytic specificity of the Lactobacillus plantarum cystathionine γ-lyase presumed by the crystallographic analysis

The reverse transsulfuration pathway, which is composed of cystathionine β-synthase (CBS) and cystathionine γ-lyase (CGL), plays a role to synthesize l-cysteine using l-serine and the sulfur atom in l-methionine. A plant-derived lactic acid bacterium Lactobacillus plantarum SN35N has been previously...

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Autores principales: Matoba, Yasuyuki, Noda, Masafumi, Yoshida, Tomoki, Oda, Kosuke, Ezumi, Yuka, Yasutake, Chiaki, Izuhara-Kihara, Hisae, Danshiitsoodol, Narandarai, Kumagai, Takanori, Sugiyama, Masanori
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7483736/
https://www.ncbi.nlm.nih.gov/pubmed/32913258
http://dx.doi.org/10.1038/s41598-020-71756-7
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author Matoba, Yasuyuki
Noda, Masafumi
Yoshida, Tomoki
Oda, Kosuke
Ezumi, Yuka
Yasutake, Chiaki
Izuhara-Kihara, Hisae
Danshiitsoodol, Narandarai
Kumagai, Takanori
Sugiyama, Masanori
author_facet Matoba, Yasuyuki
Noda, Masafumi
Yoshida, Tomoki
Oda, Kosuke
Ezumi, Yuka
Yasutake, Chiaki
Izuhara-Kihara, Hisae
Danshiitsoodol, Narandarai
Kumagai, Takanori
Sugiyama, Masanori
author_sort Matoba, Yasuyuki
collection PubMed
description The reverse transsulfuration pathway, which is composed of cystathionine β-synthase (CBS) and cystathionine γ-lyase (CGL), plays a role to synthesize l-cysteine using l-serine and the sulfur atom in l-methionine. A plant-derived lactic acid bacterium Lactobacillus plantarum SN35N has been previously found to harbor the gene cluster encoding the CBS- and CGL-like enzymes. In addition, it has been demonstrated that the L. plantarum CBS can synthesize cystathionine from O-acetyl-l-serine and l-homocysteine. The aim of this study is to characterize the enzymatic functions of the L. plantarum CGL. We have found that the enzyme has the high γ-lyase activity toward cystathionine to generate l-cysteine, together with the β-lyase activity toward l-cystine to generate l-cysteine persulfide. By the crystallographic analysis of the inactive CGL K194A mutant complexed with cystathionine, we have found the residues which recognize the distal amino and carboxyl groups of cystathionine or l-cystine. The PLP-bound substrates at the active site may take either the binding pose for the γ- or β-elimination reaction, with the former being the major reaction in the case of cystathionine.
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spelling pubmed-74837362020-09-15 Catalytic specificity of the Lactobacillus plantarum cystathionine γ-lyase presumed by the crystallographic analysis Matoba, Yasuyuki Noda, Masafumi Yoshida, Tomoki Oda, Kosuke Ezumi, Yuka Yasutake, Chiaki Izuhara-Kihara, Hisae Danshiitsoodol, Narandarai Kumagai, Takanori Sugiyama, Masanori Sci Rep Article The reverse transsulfuration pathway, which is composed of cystathionine β-synthase (CBS) and cystathionine γ-lyase (CGL), plays a role to synthesize l-cysteine using l-serine and the sulfur atom in l-methionine. A plant-derived lactic acid bacterium Lactobacillus plantarum SN35N has been previously found to harbor the gene cluster encoding the CBS- and CGL-like enzymes. In addition, it has been demonstrated that the L. plantarum CBS can synthesize cystathionine from O-acetyl-l-serine and l-homocysteine. The aim of this study is to characterize the enzymatic functions of the L. plantarum CGL. We have found that the enzyme has the high γ-lyase activity toward cystathionine to generate l-cysteine, together with the β-lyase activity toward l-cystine to generate l-cysteine persulfide. By the crystallographic analysis of the inactive CGL K194A mutant complexed with cystathionine, we have found the residues which recognize the distal amino and carboxyl groups of cystathionine or l-cystine. The PLP-bound substrates at the active site may take either the binding pose for the γ- or β-elimination reaction, with the former being the major reaction in the case of cystathionine. Nature Publishing Group UK 2020-09-10 /pmc/articles/PMC7483736/ /pubmed/32913258 http://dx.doi.org/10.1038/s41598-020-71756-7 Text en © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Matoba, Yasuyuki
Noda, Masafumi
Yoshida, Tomoki
Oda, Kosuke
Ezumi, Yuka
Yasutake, Chiaki
Izuhara-Kihara, Hisae
Danshiitsoodol, Narandarai
Kumagai, Takanori
Sugiyama, Masanori
Catalytic specificity of the Lactobacillus plantarum cystathionine γ-lyase presumed by the crystallographic analysis
title Catalytic specificity of the Lactobacillus plantarum cystathionine γ-lyase presumed by the crystallographic analysis
title_full Catalytic specificity of the Lactobacillus plantarum cystathionine γ-lyase presumed by the crystallographic analysis
title_fullStr Catalytic specificity of the Lactobacillus plantarum cystathionine γ-lyase presumed by the crystallographic analysis
title_full_unstemmed Catalytic specificity of the Lactobacillus plantarum cystathionine γ-lyase presumed by the crystallographic analysis
title_short Catalytic specificity of the Lactobacillus plantarum cystathionine γ-lyase presumed by the crystallographic analysis
title_sort catalytic specificity of the lactobacillus plantarum cystathionine γ-lyase presumed by the crystallographic analysis
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7483736/
https://www.ncbi.nlm.nih.gov/pubmed/32913258
http://dx.doi.org/10.1038/s41598-020-71756-7
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