Highly Contiguous Nanopore Genome Assembly of Chlamydomonas reinhardtii CC-1690

The current Chlamydomonas reinhardtii reference genome remains fragmented due to gaps stemming from large repetitive regions. To overcome the vast majority of these gaps, publicly available Oxford Nanopore Technology data were used to create a new reference-quality de novo genome assembly containing...

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Detalles Bibliográficos
Autores principales: O’Donnell, Samuel, Chaux, Frederic, Fischer, Gilles
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Society for Microbiology 2020
Materias:
Genome Sequences
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7484070/
https://www.ncbi.nlm.nih.gov/pubmed/32912911
http://dx.doi.org/10.1128/MRA.00726-20
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author O’Donnell, Samuel
Chaux, Frederic
Fischer, Gilles
author_facet O’Donnell, Samuel
Chaux, Frederic
Fischer, Gilles
author_sort O’Donnell, Samuel
collection PubMed
description The current Chlamydomonas reinhardtii reference genome remains fragmented due to gaps stemming from large repetitive regions. To overcome the vast majority of these gaps, publicly available Oxford Nanopore Technology data were used to create a new reference-quality de novo genome assembly containing only 21 contigs, 30/34 telomeric ends, and a genome size of 111 Mb.
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spelling pubmed-74840702020-09-25 Highly Contiguous Nanopore Genome Assembly of Chlamydomonas reinhardtii CC-1690 O’Donnell, Samuel Chaux, Frederic Fischer, Gilles Microbiol Resour Announc Genome Sequences The current Chlamydomonas reinhardtii reference genome remains fragmented due to gaps stemming from large repetitive regions. To overcome the vast majority of these gaps, publicly available Oxford Nanopore Technology data were used to create a new reference-quality de novo genome assembly containing only 21 contigs, 30/34 telomeric ends, and a genome size of 111 Mb. American Society for Microbiology 2020-09-10 /pmc/articles/PMC7484070/ /pubmed/32912911 http://dx.doi.org/10.1128/MRA.00726-20 Text en Copyright © 2020 O’Donnell et al. https://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Genome Sequences
O’Donnell, Samuel
Chaux, Frederic
Fischer, Gilles
Highly Contiguous Nanopore Genome Assembly of Chlamydomonas reinhardtii CC-1690
title Highly Contiguous Nanopore Genome Assembly of Chlamydomonas reinhardtii CC-1690
title_full Highly Contiguous Nanopore Genome Assembly of Chlamydomonas reinhardtii CC-1690
title_fullStr Highly Contiguous Nanopore Genome Assembly of Chlamydomonas reinhardtii CC-1690
title_full_unstemmed Highly Contiguous Nanopore Genome Assembly of Chlamydomonas reinhardtii CC-1690
title_short Highly Contiguous Nanopore Genome Assembly of Chlamydomonas reinhardtii CC-1690
title_sort highly contiguous nanopore genome assembly of chlamydomonas reinhardtii cc-1690
topic Genome Sequences
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7484070/
https://www.ncbi.nlm.nih.gov/pubmed/32912911
http://dx.doi.org/10.1128/MRA.00726-20
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