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ZMAT2 in Humans and Other Primates: A Highly Conserved and Understudied Gene

Recent advances in genetics present unique opportunities for enhancing our understanding of human physiology and disease predisposition through detailed analysis of gene structure, expression, and population variation via examination of data in publicly accessible genome and gene expression reposito...

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Autores principales: Baral, Kabita, Rotwein, Peter
Formato: Online Artículo Texto
Lenguaje:English
Publicado: SAGE Publications 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7485168/
https://www.ncbi.nlm.nih.gov/pubmed/32952394
http://dx.doi.org/10.1177/1176934320941500
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author Baral, Kabita
Rotwein, Peter
author_facet Baral, Kabita
Rotwein, Peter
author_sort Baral, Kabita
collection PubMed
description Recent advances in genetics present unique opportunities for enhancing our understanding of human physiology and disease predisposition through detailed analysis of gene structure, expression, and population variation via examination of data in publicly accessible genome and gene expression repositories. Yet, the vast majority of human genes remain understudied. Here, we show the scope of these genomic and genetic resources by evaluating ZMAT2, a member of a 5-gene family that through May 2020 had been the focus of only 4 peer-reviewed scientific publications. Using analysis of information extracted from public databases, we show that human ZMAT2 is a 6-exon gene and find that it exhibits minimal genetic variation in human populations and in disease states, including cancer. We further demonstrate that the gene and its encoded protein are highly conserved among nonhuman primates and define a cohort of ZMAT2 pseudogenes in the marmoset genome. Collectively, our investigations illustrate how complementary use of genomic, gene expression, and population genetic resources can lead to new insights about human and mammalian biology and evolution, and when coupled with data supporting key roles for ZMAT2 in keratinocyte differentiation and pre-RNA splicing argue that this gene is worthy of further study.
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spelling pubmed-74851682020-09-17 ZMAT2 in Humans and Other Primates: A Highly Conserved and Understudied Gene Baral, Kabita Rotwein, Peter Evol Bioinform Online Original Research Recent advances in genetics present unique opportunities for enhancing our understanding of human physiology and disease predisposition through detailed analysis of gene structure, expression, and population variation via examination of data in publicly accessible genome and gene expression repositories. Yet, the vast majority of human genes remain understudied. Here, we show the scope of these genomic and genetic resources by evaluating ZMAT2, a member of a 5-gene family that through May 2020 had been the focus of only 4 peer-reviewed scientific publications. Using analysis of information extracted from public databases, we show that human ZMAT2 is a 6-exon gene and find that it exhibits minimal genetic variation in human populations and in disease states, including cancer. We further demonstrate that the gene and its encoded protein are highly conserved among nonhuman primates and define a cohort of ZMAT2 pseudogenes in the marmoset genome. Collectively, our investigations illustrate how complementary use of genomic, gene expression, and population genetic resources can lead to new insights about human and mammalian biology and evolution, and when coupled with data supporting key roles for ZMAT2 in keratinocyte differentiation and pre-RNA splicing argue that this gene is worthy of further study. SAGE Publications 2020-09-02 /pmc/articles/PMC7485168/ /pubmed/32952394 http://dx.doi.org/10.1177/1176934320941500 Text en © The Author(s) 2020 https://creativecommons.org/licenses/by-nc/4.0/ This article is distributed under the terms of the Creative Commons Attribution-NonCommercial 4.0 License (https://creativecommons.org/licenses/by-nc/4.0/) which permits non-commercial use, reproduction and distribution of the work without further permission provided the original work is attributed as specified on the SAGE and Open Access pages (https://us.sagepub.com/en-us/nam/open-access-at-sage).
spellingShingle Original Research
Baral, Kabita
Rotwein, Peter
ZMAT2 in Humans and Other Primates: A Highly Conserved and Understudied Gene
title ZMAT2 in Humans and Other Primates: A Highly Conserved and Understudied Gene
title_full ZMAT2 in Humans and Other Primates: A Highly Conserved and Understudied Gene
title_fullStr ZMAT2 in Humans and Other Primates: A Highly Conserved and Understudied Gene
title_full_unstemmed ZMAT2 in Humans and Other Primates: A Highly Conserved and Understudied Gene
title_short ZMAT2 in Humans and Other Primates: A Highly Conserved and Understudied Gene
title_sort zmat2 in humans and other primates: a highly conserved and understudied gene
topic Original Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7485168/
https://www.ncbi.nlm.nih.gov/pubmed/32952394
http://dx.doi.org/10.1177/1176934320941500
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