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Applications of deep convolutional neural networks to predict length, circumference, and weight from mostly dewatered images of fish

Simple biometric data of fish aid fishery management tasks such as monitoring the structure of fish populations and regulating recreational harvest. While these data are foundational to fishery research and management, the collection of length and weight data through physical handling of the fish is...

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Autores principales: Bravata, Nicholas, Kelly, Dylan, Eickholt, Jesse, Bryan, Janine, Miehls, Scott, Zielinski, Dan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7487224/
https://www.ncbi.nlm.nih.gov/pubmed/32953063
http://dx.doi.org/10.1002/ece3.6618
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author Bravata, Nicholas
Kelly, Dylan
Eickholt, Jesse
Bryan, Janine
Miehls, Scott
Zielinski, Dan
author_facet Bravata, Nicholas
Kelly, Dylan
Eickholt, Jesse
Bryan, Janine
Miehls, Scott
Zielinski, Dan
author_sort Bravata, Nicholas
collection PubMed
description Simple biometric data of fish aid fishery management tasks such as monitoring the structure of fish populations and regulating recreational harvest. While these data are foundational to fishery research and management, the collection of length and weight data through physical handling of the fish is challenging as it is time consuming for personnel and can be stressful for the fish. Recent advances in imaging technology and machine learning now offer alternatives for capturing biometric data. To investigate the potential of deep convolutional neural networks to predict biometric data, several regressors were trained and evaluated on data stemming from the FishL™ Recognition System and manual measurements of length, girth, and weight. The dataset consisted of 694 fish from 22 different species common to Laurentian Great Lakes. Even with such a diverse dataset and variety of presentations by the fish, the regressors proved to be robust and achieved competitive mean percent errors in the range of 5.5 to 7.6% for length and girth on an evaluation dataset. Potential applications of this work could increase the efficiency and accuracy of routine survey work by fishery professionals and provide a means for longer‐term automated collection of fish biometric data.
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spelling pubmed-74872242020-09-18 Applications of deep convolutional neural networks to predict length, circumference, and weight from mostly dewatered images of fish Bravata, Nicholas Kelly, Dylan Eickholt, Jesse Bryan, Janine Miehls, Scott Zielinski, Dan Ecol Evol Original Research Simple biometric data of fish aid fishery management tasks such as monitoring the structure of fish populations and regulating recreational harvest. While these data are foundational to fishery research and management, the collection of length and weight data through physical handling of the fish is challenging as it is time consuming for personnel and can be stressful for the fish. Recent advances in imaging technology and machine learning now offer alternatives for capturing biometric data. To investigate the potential of deep convolutional neural networks to predict biometric data, several regressors were trained and evaluated on data stemming from the FishL™ Recognition System and manual measurements of length, girth, and weight. The dataset consisted of 694 fish from 22 different species common to Laurentian Great Lakes. Even with such a diverse dataset and variety of presentations by the fish, the regressors proved to be robust and achieved competitive mean percent errors in the range of 5.5 to 7.6% for length and girth on an evaluation dataset. Potential applications of this work could increase the efficiency and accuracy of routine survey work by fishery professionals and provide a means for longer‐term automated collection of fish biometric data. John Wiley and Sons Inc. 2020-08-04 /pmc/articles/PMC7487224/ /pubmed/32953063 http://dx.doi.org/10.1002/ece3.6618 Text en © 2020 The Authors. Ecology and Evolution published by John Wiley & Sons Ltd. This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Original Research
Bravata, Nicholas
Kelly, Dylan
Eickholt, Jesse
Bryan, Janine
Miehls, Scott
Zielinski, Dan
Applications of deep convolutional neural networks to predict length, circumference, and weight from mostly dewatered images of fish
title Applications of deep convolutional neural networks to predict length, circumference, and weight from mostly dewatered images of fish
title_full Applications of deep convolutional neural networks to predict length, circumference, and weight from mostly dewatered images of fish
title_fullStr Applications of deep convolutional neural networks to predict length, circumference, and weight from mostly dewatered images of fish
title_full_unstemmed Applications of deep convolutional neural networks to predict length, circumference, and weight from mostly dewatered images of fish
title_short Applications of deep convolutional neural networks to predict length, circumference, and weight from mostly dewatered images of fish
title_sort applications of deep convolutional neural networks to predict length, circumference, and weight from mostly dewatered images of fish
topic Original Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7487224/
https://www.ncbi.nlm.nih.gov/pubmed/32953063
http://dx.doi.org/10.1002/ece3.6618
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