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Estimating polymorphic growth curve sets with nonchronological data

1. When we collect the growth curves of many individuals, orderly variation in the curves is often observed rather than a completely random mixture of various curves. Small individuals may exhibit similar growth curves, but the curves differ from those of large individuals, whereby the curves gradua...

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Autor principal: Moriguchi, Kai
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7487249/
https://www.ncbi.nlm.nih.gov/pubmed/32953049
http://dx.doi.org/10.1002/ece3.6528
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author Moriguchi, Kai
author_facet Moriguchi, Kai
author_sort Moriguchi, Kai
collection PubMed
description 1. When we collect the growth curves of many individuals, orderly variation in the curves is often observed rather than a completely random mixture of various curves. Small individuals may exhibit similar growth curves, but the curves differ from those of large individuals, whereby the curves gradually vary from small to large individuals. It has been recognized that after standardization with the asymptotes, if all the growth curves are the same (anamorphic growth curve set), the growth curve sets can be estimated using nonchronological data; otherwise, that is, if the growth curves are not identical after standardization with the asymptotes (polymorphic growth curve set), this estimation is not feasible. However, because a given set of growth curves determines the variation in the observed data, it may be possible to estimate polymorphic growth curve sets using nonchronological data. 2. In this study, we developed an estimation method by deriving the likelihood function for polymorphic growth curve sets. The method involves simple maximum likelihood estimation. The weighted nonlinear regression and least‐squares method after the log‐transform of the anamorphic growth curve sets were included as special cases. 3. The growth curve sets of the height of cypress (Chamaecyparis obtusa) and larch (Larix kaempferi) trees were estimated. With the model selection process using the AIC and likelihood ratio test, the growth curve set for cypress was found to be polymorphic, whereas that for larch was found to be anamorphic. Improved fitting using the polymorphic model for cypress is due to resolving underdispersion (less dispersion in real data than model prediction). 4. The likelihood function for model estimation depends not only on the distribution type of asymptotes, but the definition of the growth curve set as well. Consideration of these factors may be necessary, even if environmental explanatory variables and random effects are introduced.
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spelling pubmed-74872492020-09-18 Estimating polymorphic growth curve sets with nonchronological data Moriguchi, Kai Ecol Evol Original Research 1. When we collect the growth curves of many individuals, orderly variation in the curves is often observed rather than a completely random mixture of various curves. Small individuals may exhibit similar growth curves, but the curves differ from those of large individuals, whereby the curves gradually vary from small to large individuals. It has been recognized that after standardization with the asymptotes, if all the growth curves are the same (anamorphic growth curve set), the growth curve sets can be estimated using nonchronological data; otherwise, that is, if the growth curves are not identical after standardization with the asymptotes (polymorphic growth curve set), this estimation is not feasible. However, because a given set of growth curves determines the variation in the observed data, it may be possible to estimate polymorphic growth curve sets using nonchronological data. 2. In this study, we developed an estimation method by deriving the likelihood function for polymorphic growth curve sets. The method involves simple maximum likelihood estimation. The weighted nonlinear regression and least‐squares method after the log‐transform of the anamorphic growth curve sets were included as special cases. 3. The growth curve sets of the height of cypress (Chamaecyparis obtusa) and larch (Larix kaempferi) trees were estimated. With the model selection process using the AIC and likelihood ratio test, the growth curve set for cypress was found to be polymorphic, whereas that for larch was found to be anamorphic. Improved fitting using the polymorphic model for cypress is due to resolving underdispersion (less dispersion in real data than model prediction). 4. The likelihood function for model estimation depends not only on the distribution type of asymptotes, but the definition of the growth curve set as well. Consideration of these factors may be necessary, even if environmental explanatory variables and random effects are introduced. John Wiley and Sons Inc. 2020-07-20 /pmc/articles/PMC7487249/ /pubmed/32953049 http://dx.doi.org/10.1002/ece3.6528 Text en © 2020 The Authors. Ecology and Evolution published by John Wiley & Sons Ltd. This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Original Research
Moriguchi, Kai
Estimating polymorphic growth curve sets with nonchronological data
title Estimating polymorphic growth curve sets with nonchronological data
title_full Estimating polymorphic growth curve sets with nonchronological data
title_fullStr Estimating polymorphic growth curve sets with nonchronological data
title_full_unstemmed Estimating polymorphic growth curve sets with nonchronological data
title_short Estimating polymorphic growth curve sets with nonchronological data
title_sort estimating polymorphic growth curve sets with nonchronological data
topic Original Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7487249/
https://www.ncbi.nlm.nih.gov/pubmed/32953049
http://dx.doi.org/10.1002/ece3.6528
work_keys_str_mv AT moriguchikai estimatingpolymorphicgrowthcurvesetswithnonchronologicaldata