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Development, implementation, and prospective validation of a model to predict 60-day end-of-life in hospitalized adults upon admission at three sites
BACKGROUND: Automated systems that use machine learning to estimate a patient’s risk of death are being developed to influence care. There remains sparse transparent reporting of model generalizability in different subpopulations especially for implemented systems. METHODS: A prognostic study includ...
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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BioMed Central
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7487547/ https://www.ncbi.nlm.nih.gov/pubmed/32894128 http://dx.doi.org/10.1186/s12911-020-01235-6 |
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author | Major, Vincent J. Aphinyanaphongs, Yindalon |
author_facet | Major, Vincent J. Aphinyanaphongs, Yindalon |
author_sort | Major, Vincent J. |
collection | PubMed |
description | BACKGROUND: Automated systems that use machine learning to estimate a patient’s risk of death are being developed to influence care. There remains sparse transparent reporting of model generalizability in different subpopulations especially for implemented systems. METHODS: A prognostic study included adult admissions at a multi-site, academic medical center between 2015 and 2017. A predictive model for all-cause mortality (including initiation of hospice care) within 60 days of admission was developed. Model generalizability is assessed in temporal validation in the context of potential demographic bias. A subsequent prospective cohort study was conducted at the same sites between October 2018 and June 2019. Model performance during prospective validation was quantified with areas under the receiver operating characteristic and precision recall curves stratified by site. Prospective results include timeliness, positive predictive value, and the number of actionable predictions. RESULTS: Three years of development data included 128,941 inpatient admissions (94,733 unique patients) across sites where patients are mostly white (61%) and female (60%) and 4.2% led to death within 60 days. A random forest model incorporating 9614 predictors produced areas under the receiver operating characteristic and precision recall curves of 87.2 (95% CI, 86.1–88.2) and 28.0 (95% CI, 25.0–31.0) in temporal validation. Performance marginally diverges within sites as the patient mix shifts from development to validation (patients of one site increases from 10 to 38%). Applied prospectively for nine months, 41,728 predictions were generated in real-time (median [IQR], 1.3 [0.9, 32] minutes). An operating criterion of 75% positive predictive value identified 104 predictions at very high risk (0.25%) where 65% (50 from 77 well-timed predictions) led to death within 60 days. CONCLUSION: Temporal validation demonstrates good model discrimination for 60-day mortality. Slight performance variations are observed across demographic subpopulations. The model was implemented prospectively and successfully produced meaningful estimates of risk within minutes of admission. |
format | Online Article Text |
id | pubmed-7487547 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-74875472020-09-15 Development, implementation, and prospective validation of a model to predict 60-day end-of-life in hospitalized adults upon admission at three sites Major, Vincent J. Aphinyanaphongs, Yindalon BMC Med Inform Decis Mak Research Article BACKGROUND: Automated systems that use machine learning to estimate a patient’s risk of death are being developed to influence care. There remains sparse transparent reporting of model generalizability in different subpopulations especially for implemented systems. METHODS: A prognostic study included adult admissions at a multi-site, academic medical center between 2015 and 2017. A predictive model for all-cause mortality (including initiation of hospice care) within 60 days of admission was developed. Model generalizability is assessed in temporal validation in the context of potential demographic bias. A subsequent prospective cohort study was conducted at the same sites between October 2018 and June 2019. Model performance during prospective validation was quantified with areas under the receiver operating characteristic and precision recall curves stratified by site. Prospective results include timeliness, positive predictive value, and the number of actionable predictions. RESULTS: Three years of development data included 128,941 inpatient admissions (94,733 unique patients) across sites where patients are mostly white (61%) and female (60%) and 4.2% led to death within 60 days. A random forest model incorporating 9614 predictors produced areas under the receiver operating characteristic and precision recall curves of 87.2 (95% CI, 86.1–88.2) and 28.0 (95% CI, 25.0–31.0) in temporal validation. Performance marginally diverges within sites as the patient mix shifts from development to validation (patients of one site increases from 10 to 38%). Applied prospectively for nine months, 41,728 predictions were generated in real-time (median [IQR], 1.3 [0.9, 32] minutes). An operating criterion of 75% positive predictive value identified 104 predictions at very high risk (0.25%) where 65% (50 from 77 well-timed predictions) led to death within 60 days. CONCLUSION: Temporal validation demonstrates good model discrimination for 60-day mortality. Slight performance variations are observed across demographic subpopulations. The model was implemented prospectively and successfully produced meaningful estimates of risk within minutes of admission. BioMed Central 2020-09-07 /pmc/articles/PMC7487547/ /pubmed/32894128 http://dx.doi.org/10.1186/s12911-020-01235-6 Text en © The Author(s) 2020 Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data. |
spellingShingle | Research Article Major, Vincent J. Aphinyanaphongs, Yindalon Development, implementation, and prospective validation of a model to predict 60-day end-of-life in hospitalized adults upon admission at three sites |
title | Development, implementation, and prospective validation of a model to predict 60-day end-of-life in hospitalized adults upon admission at three sites |
title_full | Development, implementation, and prospective validation of a model to predict 60-day end-of-life in hospitalized adults upon admission at three sites |
title_fullStr | Development, implementation, and prospective validation of a model to predict 60-day end-of-life in hospitalized adults upon admission at three sites |
title_full_unstemmed | Development, implementation, and prospective validation of a model to predict 60-day end-of-life in hospitalized adults upon admission at three sites |
title_short | Development, implementation, and prospective validation of a model to predict 60-day end-of-life in hospitalized adults upon admission at three sites |
title_sort | development, implementation, and prospective validation of a model to predict 60-day end-of-life in hospitalized adults upon admission at three sites |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7487547/ https://www.ncbi.nlm.nih.gov/pubmed/32894128 http://dx.doi.org/10.1186/s12911-020-01235-6 |
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