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Semi-supervised method for image texture classification of pituitary tumors via CycleGAN and optimized feature extraction

BACKGROUND: Accurately determining the softness level of pituitary tumors preoperatively by using their image textures can provide a basis for surgical options and prognosis. Existing methods for this problem require manual intervention, which could hinder the efficiency and accuracy considerably. M...

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Autores principales: Zhu, Hong, Fang, Qianhao, Huang, Yihe, Xu, Kai
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7488038/
https://www.ncbi.nlm.nih.gov/pubmed/32907561
http://dx.doi.org/10.1186/s12911-020-01230-x
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author Zhu, Hong
Fang, Qianhao
Huang, Yihe
Xu, Kai
author_facet Zhu, Hong
Fang, Qianhao
Huang, Yihe
Xu, Kai
author_sort Zhu, Hong
collection PubMed
description BACKGROUND: Accurately determining the softness level of pituitary tumors preoperatively by using their image textures can provide a basis for surgical options and prognosis. Existing methods for this problem require manual intervention, which could hinder the efficiency and accuracy considerably. METHODS: We present an automatic method for diagnosing the texture of pituitary tumors using unbalanced sequence image data. Firstly, for the small sample problem in our pituitary tumor MRI image dataset where T1 and T2 sequence data are unbalanced (due to data missing) and under-sampled, our method uses a CycleGAN (Cycle-Consistent Adversarial Networks) model for domain conversion to obtain fully sampled MRI spatial sequence. Then, it uses a DenseNet (Densely Connected Convolutional Networks)-ResNet(Deep Residual Networks) based Autoencoder framework to optimize the feature extraction process for pituitary tumor image data. Finally, to take advantage of sequence data, it uses a CRNN (Convolutional Recurrent Neural Network) model to classify pituitary tumors based on their predicted softness levels. RESULTS: Experiments show that our method is the best in terms of efficiency and accuracy (91.78%) compared to other methods. CONCLUSIONS: We propose a semi-supervised method for grading pituitary tumor texture. This method can accurately determine the softness level of pituitary tumors, which provides convenience for surgical selection and prognosis, and improves the diagnostic efficiency of pituitary tumors.
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spelling pubmed-74880382020-09-16 Semi-supervised method for image texture classification of pituitary tumors via CycleGAN and optimized feature extraction Zhu, Hong Fang, Qianhao Huang, Yihe Xu, Kai BMC Med Inform Decis Mak Research Article BACKGROUND: Accurately determining the softness level of pituitary tumors preoperatively by using their image textures can provide a basis for surgical options and prognosis. Existing methods for this problem require manual intervention, which could hinder the efficiency and accuracy considerably. METHODS: We present an automatic method for diagnosing the texture of pituitary tumors using unbalanced sequence image data. Firstly, for the small sample problem in our pituitary tumor MRI image dataset where T1 and T2 sequence data are unbalanced (due to data missing) and under-sampled, our method uses a CycleGAN (Cycle-Consistent Adversarial Networks) model for domain conversion to obtain fully sampled MRI spatial sequence. Then, it uses a DenseNet (Densely Connected Convolutional Networks)-ResNet(Deep Residual Networks) based Autoencoder framework to optimize the feature extraction process for pituitary tumor image data. Finally, to take advantage of sequence data, it uses a CRNN (Convolutional Recurrent Neural Network) model to classify pituitary tumors based on their predicted softness levels. RESULTS: Experiments show that our method is the best in terms of efficiency and accuracy (91.78%) compared to other methods. CONCLUSIONS: We propose a semi-supervised method for grading pituitary tumor texture. This method can accurately determine the softness level of pituitary tumors, which provides convenience for surgical selection and prognosis, and improves the diagnostic efficiency of pituitary tumors. BioMed Central 2020-09-09 /pmc/articles/PMC7488038/ /pubmed/32907561 http://dx.doi.org/10.1186/s12911-020-01230-x Text en © The Author(s) 2020 Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Research Article
Zhu, Hong
Fang, Qianhao
Huang, Yihe
Xu, Kai
Semi-supervised method for image texture classification of pituitary tumors via CycleGAN and optimized feature extraction
title Semi-supervised method for image texture classification of pituitary tumors via CycleGAN and optimized feature extraction
title_full Semi-supervised method for image texture classification of pituitary tumors via CycleGAN and optimized feature extraction
title_fullStr Semi-supervised method for image texture classification of pituitary tumors via CycleGAN and optimized feature extraction
title_full_unstemmed Semi-supervised method for image texture classification of pituitary tumors via CycleGAN and optimized feature extraction
title_short Semi-supervised method for image texture classification of pituitary tumors via CycleGAN and optimized feature extraction
title_sort semi-supervised method for image texture classification of pituitary tumors via cyclegan and optimized feature extraction
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7488038/
https://www.ncbi.nlm.nih.gov/pubmed/32907561
http://dx.doi.org/10.1186/s12911-020-01230-x
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