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Evaluating the Potential of T Cell Receptor Repertoires in Predicting the Prognosis of Resectable Non-Small Cell Lung Cancers

For resectable cancer patients, a method that could precisely predict the risk of postoperative recurrence would be crucial for guiding adjuvant treatment. Since T cell receptor (TCR) repertoires had been shown to be closely related to the dynamics of cancers, here we enrolled a cohort of patients t...

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Autores principales: Song, Zhengbo, Chen, Xiangbin, Shi, Yi, Huang, Rongfang, Wang, Wenxian, Zhu, Kunshou, Lin, Shaofeng, Wang, Minxian, Tian, Geng, Yang, Jialiang, Chen, Gang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Society of Gene & Cell Therapy 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7488751/
https://www.ncbi.nlm.nih.gov/pubmed/32995352
http://dx.doi.org/10.1016/j.omtm.2020.05.020
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author Song, Zhengbo
Chen, Xiangbin
Shi, Yi
Huang, Rongfang
Wang, Wenxian
Zhu, Kunshou
Lin, Shaofeng
Wang, Minxian
Tian, Geng
Yang, Jialiang
Chen, Gang
author_facet Song, Zhengbo
Chen, Xiangbin
Shi, Yi
Huang, Rongfang
Wang, Wenxian
Zhu, Kunshou
Lin, Shaofeng
Wang, Minxian
Tian, Geng
Yang, Jialiang
Chen, Gang
author_sort Song, Zhengbo
collection PubMed
description For resectable cancer patients, a method that could precisely predict the risk of postoperative recurrence would be crucial for guiding adjuvant treatment. Since T cell receptor (TCR) repertoires had been shown to be closely related to the dynamics of cancers, here we enrolled a cohort of patients to evaluate the potential of TCR repertoires in predicting the prognosis of resectable non-small cell lung cancers. Specifically, TCRβ repertoires were analyzed in surgical tumor tissues and matched adjacent non-tumor tissues from 39 patients enrolled with resectable non-small cell lung cancer, through target enrichment and high-throughput sequencing. As a result, there are significant differences between the TCR repertories of tumor samples and those of matched adjacent non-tumor samples as evaluated by criteria like the number of clonotypes. In addition, TCR repertoires were significantly associated with a few clinical features, as well as somatic mutations. Finally, certain TCRβ variable-joining (V-J) pairings were featured to build a logistic regression model in predicting postoperative recurrence of resectable non-small cell lung cancers with a testing area under the receiver operating characteristic curve (AUC) of around 0.9. Thus, we hypothesize that TCR repertoires could be potentially used to predict prognosis after curative surgery for non-small cell lung cancer patients.
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spelling pubmed-74887512020-09-28 Evaluating the Potential of T Cell Receptor Repertoires in Predicting the Prognosis of Resectable Non-Small Cell Lung Cancers Song, Zhengbo Chen, Xiangbin Shi, Yi Huang, Rongfang Wang, Wenxian Zhu, Kunshou Lin, Shaofeng Wang, Minxian Tian, Geng Yang, Jialiang Chen, Gang Mol Ther Methods Clin Dev Original Article For resectable cancer patients, a method that could precisely predict the risk of postoperative recurrence would be crucial for guiding adjuvant treatment. Since T cell receptor (TCR) repertoires had been shown to be closely related to the dynamics of cancers, here we enrolled a cohort of patients to evaluate the potential of TCR repertoires in predicting the prognosis of resectable non-small cell lung cancers. Specifically, TCRβ repertoires were analyzed in surgical tumor tissues and matched adjacent non-tumor tissues from 39 patients enrolled with resectable non-small cell lung cancer, through target enrichment and high-throughput sequencing. As a result, there are significant differences between the TCR repertories of tumor samples and those of matched adjacent non-tumor samples as evaluated by criteria like the number of clonotypes. In addition, TCR repertoires were significantly associated with a few clinical features, as well as somatic mutations. Finally, certain TCRβ variable-joining (V-J) pairings were featured to build a logistic regression model in predicting postoperative recurrence of resectable non-small cell lung cancers with a testing area under the receiver operating characteristic curve (AUC) of around 0.9. Thus, we hypothesize that TCR repertoires could be potentially used to predict prognosis after curative surgery for non-small cell lung cancer patients. American Society of Gene & Cell Therapy 2020-05-22 /pmc/articles/PMC7488751/ /pubmed/32995352 http://dx.doi.org/10.1016/j.omtm.2020.05.020 Text en © 2020 The Author(s) http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Original Article
Song, Zhengbo
Chen, Xiangbin
Shi, Yi
Huang, Rongfang
Wang, Wenxian
Zhu, Kunshou
Lin, Shaofeng
Wang, Minxian
Tian, Geng
Yang, Jialiang
Chen, Gang
Evaluating the Potential of T Cell Receptor Repertoires in Predicting the Prognosis of Resectable Non-Small Cell Lung Cancers
title Evaluating the Potential of T Cell Receptor Repertoires in Predicting the Prognosis of Resectable Non-Small Cell Lung Cancers
title_full Evaluating the Potential of T Cell Receptor Repertoires in Predicting the Prognosis of Resectable Non-Small Cell Lung Cancers
title_fullStr Evaluating the Potential of T Cell Receptor Repertoires in Predicting the Prognosis of Resectable Non-Small Cell Lung Cancers
title_full_unstemmed Evaluating the Potential of T Cell Receptor Repertoires in Predicting the Prognosis of Resectable Non-Small Cell Lung Cancers
title_short Evaluating the Potential of T Cell Receptor Repertoires in Predicting the Prognosis of Resectable Non-Small Cell Lung Cancers
title_sort evaluating the potential of t cell receptor repertoires in predicting the prognosis of resectable non-small cell lung cancers
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7488751/
https://www.ncbi.nlm.nih.gov/pubmed/32995352
http://dx.doi.org/10.1016/j.omtm.2020.05.020
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