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IRF1-mediated immune cell infiltration is associated with metastasis in colon adenocarcinoma
BACKGROUND: Evidence suggests that metastasis is chiefly responsible for the poor prognosis of colon adenocarcinoma (COAD). The tumor microenvironment plays a vital role in regulating this biological process. However, the mechanisms involved remain unclear. The aim of this study was to identify cruc...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Lippincott Williams & Wilkins
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7489583/ https://www.ncbi.nlm.nih.gov/pubmed/32925784 http://dx.doi.org/10.1097/MD.0000000000022170 |
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author | Shao, Yao-jian Ni, Jun-jie Wei, Shen-yu Weng, Xiong-peng Shen, Meng-die Jia, Yi-xin Meng, Li-na |
author_facet | Shao, Yao-jian Ni, Jun-jie Wei, Shen-yu Weng, Xiong-peng Shen, Meng-die Jia, Yi-xin Meng, Li-na |
author_sort | Shao, Yao-jian |
collection | PubMed |
description | BACKGROUND: Evidence suggests that metastasis is chiefly responsible for the poor prognosis of colon adenocarcinoma (COAD). The tumor microenvironment plays a vital role in regulating this biological process. However, the mechanisms involved remain unclear. The aim of this study was to identify crucial metastasis-related biomarkers in the tumor microenvironment and investigate its association with tumor-infiltrating immune cells. METHODS: We obtained gene expression profiles and clinical information from The Cancer Genome Atlas database. According to the “Estimation of STromal and Immune cells in MAlignant Tumor tissue using Expression data” algorithm, each sample generated the immune and stromal scores. Following correlation analysis, the metastasis-related gene was identified in The Cancer Genome Atlas database and validated in the GSE40967 dataset from Gene Expression Omnibus. The correlation between metastasis-related gene and infiltrating immune cells was assessed using the Tumor IMmune Estimation Resource database. RESULTS: The analysis included 332 patients; the metastatic COAD samples showed a low immune score. Correlation analysis results showed that interferon regulatory factor 1 (IRF1) was associated with tumor stage, lymph node metastasis, and distant metastasis. Furthermore, significant associations between IRF1 and CD8+ T cells, T cell (general), dendritic cells, T-helper 1 cells, and T cell exhaustion were demonstrated by Spearmans correlation coefficients and P values. CONCLUSIONS: The present findings suggest that IRF1 is associated with metastasis and the degree of immune infiltration of CD8+ T cells (general), dendritic cells, T-helper 1 cells, and T cell exhaustion in COAD. These results may provide information for immunotherapy in colon cancer. |
format | Online Article Text |
id | pubmed-7489583 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Lippincott Williams & Wilkins |
record_format | MEDLINE/PubMed |
spelling | pubmed-74895832020-09-24 IRF1-mediated immune cell infiltration is associated with metastasis in colon adenocarcinoma Shao, Yao-jian Ni, Jun-jie Wei, Shen-yu Weng, Xiong-peng Shen, Meng-die Jia, Yi-xin Meng, Li-na Medicine (Baltimore) 4500 BACKGROUND: Evidence suggests that metastasis is chiefly responsible for the poor prognosis of colon adenocarcinoma (COAD). The tumor microenvironment plays a vital role in regulating this biological process. However, the mechanisms involved remain unclear. The aim of this study was to identify crucial metastasis-related biomarkers in the tumor microenvironment and investigate its association with tumor-infiltrating immune cells. METHODS: We obtained gene expression profiles and clinical information from The Cancer Genome Atlas database. According to the “Estimation of STromal and Immune cells in MAlignant Tumor tissue using Expression data” algorithm, each sample generated the immune and stromal scores. Following correlation analysis, the metastasis-related gene was identified in The Cancer Genome Atlas database and validated in the GSE40967 dataset from Gene Expression Omnibus. The correlation between metastasis-related gene and infiltrating immune cells was assessed using the Tumor IMmune Estimation Resource database. RESULTS: The analysis included 332 patients; the metastatic COAD samples showed a low immune score. Correlation analysis results showed that interferon regulatory factor 1 (IRF1) was associated with tumor stage, lymph node metastasis, and distant metastasis. Furthermore, significant associations between IRF1 and CD8+ T cells, T cell (general), dendritic cells, T-helper 1 cells, and T cell exhaustion were demonstrated by Spearmans correlation coefficients and P values. CONCLUSIONS: The present findings suggest that IRF1 is associated with metastasis and the degree of immune infiltration of CD8+ T cells (general), dendritic cells, T-helper 1 cells, and T cell exhaustion in COAD. These results may provide information for immunotherapy in colon cancer. Lippincott Williams & Wilkins 2020-09-11 /pmc/articles/PMC7489583/ /pubmed/32925784 http://dx.doi.org/10.1097/MD.0000000000022170 Text en Copyright © 2020 the Author(s). Published by Wolters Kluwer Health, Inc. http://creativecommons.org/licenses/by/4.0 This is an open access article distributed under the Creative Commons Attribution License 4.0 (CCBY), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. http://creativecommons.org/licenses/by/4.0 |
spellingShingle | 4500 Shao, Yao-jian Ni, Jun-jie Wei, Shen-yu Weng, Xiong-peng Shen, Meng-die Jia, Yi-xin Meng, Li-na IRF1-mediated immune cell infiltration is associated with metastasis in colon adenocarcinoma |
title | IRF1-mediated immune cell infiltration is associated with metastasis in colon adenocarcinoma |
title_full | IRF1-mediated immune cell infiltration is associated with metastasis in colon adenocarcinoma |
title_fullStr | IRF1-mediated immune cell infiltration is associated with metastasis in colon adenocarcinoma |
title_full_unstemmed | IRF1-mediated immune cell infiltration is associated with metastasis in colon adenocarcinoma |
title_short | IRF1-mediated immune cell infiltration is associated with metastasis in colon adenocarcinoma |
title_sort | irf1-mediated immune cell infiltration is associated with metastasis in colon adenocarcinoma |
topic | 4500 |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7489583/ https://www.ncbi.nlm.nih.gov/pubmed/32925784 http://dx.doi.org/10.1097/MD.0000000000022170 |
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