Cargando…
Prognostic Values of Radiosensitivity Genes and CD19 Status in Gastric Cancer: A Retrospective Study Using TCGA Database
BACKGROUND: The correlation between the radiosensitivity genes combined with CD19 status and clinical outcome was investigated to identify gastric cancer (GC) patients who would benefit from radiotherapy combined with CAR-T cell therapy. METHODS: The gene expression and clinical features were downlo...
Autores principales: | , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Dove
2020
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7490048/ https://www.ncbi.nlm.nih.gov/pubmed/32982372 http://dx.doi.org/10.2147/PGPM.S265121 |
_version_ | 1783581969180786688 |
---|---|
author | Liang, Li-Bo Huang, Xin-Yan He, He Liu, Ji-Yan |
author_facet | Liang, Li-Bo Huang, Xin-Yan He, He Liu, Ji-Yan |
author_sort | Liang, Li-Bo |
collection | PubMed |
description | BACKGROUND: The correlation between the radiosensitivity genes combined with CD19 status and clinical outcome was investigated to identify gastric cancer (GC) patients who would benefit from radiotherapy combined with CAR-T cell therapy. METHODS: The gene expression and clinical features were downloaded from The Cancer Genome Atlas (TCGA) Stomach Cancer (STAD). To identify the hub radiosensitivity genes and CD19 status, 407 patients were categorized into two groups: radiosensitivity (RS) and radioresistance (RR) based on the prognosis. The chi-square test, Mann–Whitney test, and Kaplan–Meier survival analysis were applied to compare the differential expression in these groups and analyze the correlation between the gene expression and clinical outcome and features. Finally, the influencing factors for the prognosis of GC were investigated by multiple Cox regression, especially in RS patients. RESULTS: A total of 15 differential expression genes, containing two communities with 8 hub radiosensitivity genes, were identified. We also identified a 2-gene signature model with a negative coefficient and calculated the risk score for the prognosis of GC. Also, Helicobacter pylori infection was validated, and the high-risk score of radiosensitivity genes was the risk factor, and high CD19 expression was the protective factor for the prognosis. CONCLUSION: The radiosensitivity gene signature and CD19 expression predicted the clinical outcome of GC patients. |
format | Online Article Text |
id | pubmed-7490048 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Dove |
record_format | MEDLINE/PubMed |
spelling | pubmed-74900482020-09-24 Prognostic Values of Radiosensitivity Genes and CD19 Status in Gastric Cancer: A Retrospective Study Using TCGA Database Liang, Li-Bo Huang, Xin-Yan He, He Liu, Ji-Yan Pharmgenomics Pers Med Original Research BACKGROUND: The correlation between the radiosensitivity genes combined with CD19 status and clinical outcome was investigated to identify gastric cancer (GC) patients who would benefit from radiotherapy combined with CAR-T cell therapy. METHODS: The gene expression and clinical features were downloaded from The Cancer Genome Atlas (TCGA) Stomach Cancer (STAD). To identify the hub radiosensitivity genes and CD19 status, 407 patients were categorized into two groups: radiosensitivity (RS) and radioresistance (RR) based on the prognosis. The chi-square test, Mann–Whitney test, and Kaplan–Meier survival analysis were applied to compare the differential expression in these groups and analyze the correlation between the gene expression and clinical outcome and features. Finally, the influencing factors for the prognosis of GC were investigated by multiple Cox regression, especially in RS patients. RESULTS: A total of 15 differential expression genes, containing two communities with 8 hub radiosensitivity genes, were identified. We also identified a 2-gene signature model with a negative coefficient and calculated the risk score for the prognosis of GC. Also, Helicobacter pylori infection was validated, and the high-risk score of radiosensitivity genes was the risk factor, and high CD19 expression was the protective factor for the prognosis. CONCLUSION: The radiosensitivity gene signature and CD19 expression predicted the clinical outcome of GC patients. Dove 2020-09-08 /pmc/articles/PMC7490048/ /pubmed/32982372 http://dx.doi.org/10.2147/PGPM.S265121 Text en © 2020 Liang et al. http://creativecommons.org/licenses/by-nc/3.0/ This work is published and licensed by Dove Medical Press Limited. The full terms of this license are available at https://www.dovepress.com/terms.php and incorporate the Creative Commons Attribution – Non Commercial (unported, v3.0) License (http://creativecommons.org/licenses/by-nc/3.0/). By accessing the work you hereby accept the Terms. Non-commercial uses of the work are permitted without any further permission from Dove Medical Press Limited, provided the work is properly attributed. For permission for commercial use of this work, please see paragraphs 4.2 and 5 of our Terms (https://www.dovepress.com/terms.php). |
spellingShingle | Original Research Liang, Li-Bo Huang, Xin-Yan He, He Liu, Ji-Yan Prognostic Values of Radiosensitivity Genes and CD19 Status in Gastric Cancer: A Retrospective Study Using TCGA Database |
title | Prognostic Values of Radiosensitivity Genes and CD19 Status in Gastric Cancer: A Retrospective Study Using TCGA Database |
title_full | Prognostic Values of Radiosensitivity Genes and CD19 Status in Gastric Cancer: A Retrospective Study Using TCGA Database |
title_fullStr | Prognostic Values of Radiosensitivity Genes and CD19 Status in Gastric Cancer: A Retrospective Study Using TCGA Database |
title_full_unstemmed | Prognostic Values of Radiosensitivity Genes and CD19 Status in Gastric Cancer: A Retrospective Study Using TCGA Database |
title_short | Prognostic Values of Radiosensitivity Genes and CD19 Status in Gastric Cancer: A Retrospective Study Using TCGA Database |
title_sort | prognostic values of radiosensitivity genes and cd19 status in gastric cancer: a retrospective study using tcga database |
topic | Original Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7490048/ https://www.ncbi.nlm.nih.gov/pubmed/32982372 http://dx.doi.org/10.2147/PGPM.S265121 |
work_keys_str_mv | AT lianglibo prognosticvaluesofradiosensitivitygenesandcd19statusingastriccanceraretrospectivestudyusingtcgadatabase AT huangxinyan prognosticvaluesofradiosensitivitygenesandcd19statusingastriccanceraretrospectivestudyusingtcgadatabase AT hehe prognosticvaluesofradiosensitivitygenesandcd19statusingastriccanceraretrospectivestudyusingtcgadatabase AT liujiyan prognosticvaluesofradiosensitivitygenesandcd19statusingastriccanceraretrospectivestudyusingtcgadatabase |