Cargando…

Structure-seq2 probing of RNA structure upon amino acid starvation reveals both known and novel RNA switches in Bacillus subtilis

RNA structure influences numerous processes in all organisms. In bacteria, these processes include transcription termination and attenuation, small RNA and protein binding, translation initiation, and mRNA stability, and can be regulated via metabolite availability and other stresses. Here we use St...

Descripción completa

Detalles Bibliográficos
Autores principales:	Ritchey, Laura E., Tack, David C., Yakhnin, Helen, Jolley, Elizabeth A., Assmann, Sarah M., Bevilacqua, Philip C., Babitzke, Paul
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Cold Spring Harbor Laboratory Press 2020
Materias:	Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7491331/ https://www.ncbi.nlm.nih.gov/pubmed/32611709 http://dx.doi.org/10.1261/rna.075986.120

Ejemplares similares

Structure-seq2: sensitive and accurate genome-wide profiling of RNA structure in vivo
por: Ritchey, Laura E., et al.
Publicado: (2017)

NusG-Dependent RNA Polymerase Pausing and Tylosin-Dependent Ribosome Stalling Are Required for Tylosin Resistance by Inducing 23S rRNA Methylation in Bacillus subtilis
por: Yakhnin, Helen, et al.
Publicado: (2019)

Ribosomal protein L10(L12)(4) autoregulates expression of the Bacillus subtilis rplJL operon by a transcription attenuation mechanism
por: Yakhnin, Helen, et al.
Publicado: (2015)

Glyoxals as in vivo RNA structural probes of guanine base-pairing
por: Mitchell, David, et al.
Publicado: (2018)

mRNA structural elements immediately upstream of the start codon dictate dependence upon eIF4A helicase activity
por: Waldron, Joseph A., et al.
Publicado: (2019)

Analysis of mRNA Decay Intermediates in Bacillus subtilis 3′ Exoribonuclease and RNA Helicase Mutant Strains
por: Chhabra, Shivani, et al.
Publicado: (2022)

Expression of Bacillus subtilis ABCF antibiotic resistance factor VmlR is regulated by RNA polymerase pausing, transcription attenuation, translation attenuation and (p)ppGpp
por: Takada, Hiraku, et al.
Publicado: (2022)

In vivo RNA structural probing of uracil and guanine base-pairing by 1-ethyl-3-(3-dimethylaminopropyl)carbodiimide (EDC)
por: Mitchell, David, et al.
Publicado: (2019)

Genome-wide RNA structurome reprogramming by acute heat shock globally regulates mRNA abundance
por: Su, Zhao, et al.
Publicado: (2018)

Structural and Functional Insight into the Mechanism of Bacillus subtilis 6S-1 RNA Release from RNA Polymerase
por: Ganapathy, Sweetha, et al.
Publicado: (2022)

MtnK, methylthioribose kinase, is a starvation-induced protein in Bacillus subtilis
por: Sekowska, Agnieszka, et al.
Publicado: (2001)

In vivo-like nearest neighbor parameters improve prediction of fractional RNA base-pairing in cells
por: Sieg, Jacob P, et al.
Publicado: (2023)

Study on the mechanism of production of γ-PGA and nattokinase in Bacillus subtilis natto based on RNA-seq analysis
por: Li, Min, et al.
Publicado: (2021)

Metabolic Perturbations in a Bacillus subtilis clpP Mutant during Glucose Starvation
por: Schultz, Daniel, et al.
Publicado: (2017)

The Adaptive Morphology of Bacillus subtilis Biofilms: A Defense Mechanism against Bacterial Starvation
por: Gingichashvili, Sarah, et al.
Publicado: (2019)

Fine Structure of Bacillus subtilis : I. Fixation
por: Tokuyasu, Kiyoteru, et al.
Publicado: (1959)

Structural Analysis of Bacillus subtilis Sigma Factors
por: Collins, Katherine M., et al.
Publicado: (2023)

RNA-seq analysis identified glucose-responsive genes and YqfO as a global regulator in Bacillus subtilis
por: Kanesaki, Yu, et al.
Publicado: (2021)

CsrA-Mediated Translational Activation of the hmsE mRNA Enhances HmsD-Dependent C-di-GMP-Enabled Biofilm Production in Yersinia pestis
por: Silva-Rohwer, Amelia R., et al.
Publicado: (2023)

Localization of Components of the RNA-Degrading Machine in Bacillus subtilis
por: Cascante-Estepa, Nora, et al.
Publicado: (2016)

Real-Time Messenger RNA Dynamics in Bacillus subtilis
por: Sattler, Laura, et al.
Publicado: (2021)

Crystal structure of Bacillus subtilis TrmB, the tRNA (m(7)G46) methyltransferase
por: Zegers, Ingrid, et al.
Publicado: (2006)

NMR structure and dynamics of the Specifier Loop domain from the Bacillus subtilis tyrS T box leader RNA
por: Wang, Jiachen, et al.
Publicado: (2010)

Fine Structure of Bacillus subtilis : II. Sporulation Progress
por: Tokuyasu, Kiyoteru, et al.
Publicado: (1959)

Rock, scissors, paper: How RNA structure informs function
por: Assmann, Sarah M, et al.
Publicado: (2023)

Crystal structure of Hfq from Bacillus subtilis in complex with SELEX-derived RNA aptamer: insight into RNA-binding properties of bacterial Hfq
por: Someya, Tatsuhiko, et al.
Publicado: (2012)

Intermolecular Communication in Bacillus subtilis: RNA-RNA, RNA-Protein and Small Protein-Protein Interactions
por: Ul Haq, Inam, et al.
Publicado: (2020)

Dynamic structures of Bacillus subtilis RecN–DNA complexes
por: Sanchez, Humberto, et al.
Publicado: (2008)

FINE STRUCTURE OBSERVED IN 50S RIBOSOMAL SUBUNITS OF BACILLUS SUBTILIS
por: Nanninga, N.
Publicado: (1967)

Structural changes of TasA in biofilm formation of Bacillus subtilis
por: Diehl, Anne, et al.
Publicado: (2018)

Specific RNA Interference in Caenorhabditis elegans by Ingested dsRNA Expressed in Bacillus subtilis
por: Lezzerini, Marco, et al.
Publicado: (2015)

Elucidating the 16S rRNA 3′ boundaries and defining optimal SD/aSD pairing in Escherichia coli and Bacillus subtilis using RNA-Seq data
por: Wei, Yulong, et al.
Publicado: (2017)

Genome-wide analysis of the in vivo tRNA structurome reveals RNA structural and modification dynamics under heat stress
por: Yamagami, Ryota, et al.
Publicado: (2022)

Assaying RNA structure with LASER-Seq
por: Zinshteyn, Boris, et al.
Publicado: (2019)

Survey and Validation of tRNA Modifications and Their Corresponding Genes in Bacillus subtilis sp Subtilis Strain 168
por: de Crécy-Lagard, Valérie, et al.
Publicado: (2020)

Non-sterile Submerged Fermentation of Fibrinolytic Enzyme by Marine Bacillus subtilis Harboring Antibacterial Activity With Starvation Strategy
por: Pan, Shihan, et al.
Publicado: (2019)

INFLUENCE OF TEMPERATURE AND HYDROGEN ION CONCENTRATION UPON THE SPORE CYCLE OF BACILLUS SUBTILIS
por: Itano, Arao, et al.
Publicado: (1919)

Degradation of nanoRNA is performed by multiple redundant RNases in Bacillus subtilis
por: Fang, Ming, et al.
Publicado: (2009)

Small Regulatory RNA-Induced Growth Rate Heterogeneity of Bacillus subtilis
por: Mars, Ruben A. T., et al.
Publicado: (2015)

Modeling RNA secondary structure folding ensembles using SHAPE mapping data
por: Spasic, Aleksandar, et al.
Publicado: (2018)

Cannot write session to /tmp/vufind_sessions/sess_su6mvj0u4sqs06v2n5542qi5np