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Lung Development Genes and Adult Lung Function

Rationale: Poor lung health in adult life may occur partly through suboptimal growth and development, as suggested by epidemiological evidence pointing to early life risk factors. Objectives: To systematically investigate the effects of lung development genes on adult lung function. Methods: Using U...

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Autores principales: Portas, Laura, Pereira, Miguel, Shaheen, Seif O., Wyss, Annah B., London, Stephanie J., Burney, Peter G. J., Hind, Matthew, Dean, Charlotte H., Minelli, Cosetta
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Thoracic Society 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7491406/
https://www.ncbi.nlm.nih.gov/pubmed/32392078
http://dx.doi.org/10.1164/rccm.201912-2338OC
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author Portas, Laura
Pereira, Miguel
Shaheen, Seif O.
Wyss, Annah B.
London, Stephanie J.
Burney, Peter G. J.
Hind, Matthew
Dean, Charlotte H.
Minelli, Cosetta
author_facet Portas, Laura
Pereira, Miguel
Shaheen, Seif O.
Wyss, Annah B.
London, Stephanie J.
Burney, Peter G. J.
Hind, Matthew
Dean, Charlotte H.
Minelli, Cosetta
author_sort Portas, Laura
collection PubMed
description Rationale: Poor lung health in adult life may occur partly through suboptimal growth and development, as suggested by epidemiological evidence pointing to early life risk factors. Objectives: To systematically investigate the effects of lung development genes on adult lung function. Methods: Using UK Biobank data, we tested the association of 391 genes known to influence lung development with FVC and FEV(1)/FVC. We split the dataset into two random subsets of 207,616 and 138,411 individuals, using the larger subset to select the most promising signals and the smaller subset for replication. Measurements and Main Results: We identified 55 genes, of which 36 (16 for FVC, 19 for FEV(1)/FVC, and one for both) had not been identified in the largest, most recent genome-wide study of lung function. Most of these 36 signals were intronic variants; expression data from blood and lung tissue showed that the majority affect the expression of the genes they lie within. Further testing of 34 of these 36 signals in the CHARGE and SpiroMeta consortia showed that 16 replicated after Bonferroni correction and another 12 replicated at nominal significance level. Of the 55 genes, 53 fell into four biological categories whose function is to regulate organ size and cell integrity (growth factors; transcriptional regulators; cell-to-cell adhesion; extracellular matrix), suggesting that these specific processes are important for adult lung health. Conclusions: Our study demonstrates the importance of lung development genes in regulating adult lung function and influencing both restrictive and obstructive patterns. Further investigation of these developmental pathways could lead to druggable targets.
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spelling pubmed-74914062020-09-16 Lung Development Genes and Adult Lung Function Portas, Laura Pereira, Miguel Shaheen, Seif O. Wyss, Annah B. London, Stephanie J. Burney, Peter G. J. Hind, Matthew Dean, Charlotte H. Minelli, Cosetta Am J Respir Crit Care Med Original Articles Rationale: Poor lung health in adult life may occur partly through suboptimal growth and development, as suggested by epidemiological evidence pointing to early life risk factors. Objectives: To systematically investigate the effects of lung development genes on adult lung function. Methods: Using UK Biobank data, we tested the association of 391 genes known to influence lung development with FVC and FEV(1)/FVC. We split the dataset into two random subsets of 207,616 and 138,411 individuals, using the larger subset to select the most promising signals and the smaller subset for replication. Measurements and Main Results: We identified 55 genes, of which 36 (16 for FVC, 19 for FEV(1)/FVC, and one for both) had not been identified in the largest, most recent genome-wide study of lung function. Most of these 36 signals were intronic variants; expression data from blood and lung tissue showed that the majority affect the expression of the genes they lie within. Further testing of 34 of these 36 signals in the CHARGE and SpiroMeta consortia showed that 16 replicated after Bonferroni correction and another 12 replicated at nominal significance level. Of the 55 genes, 53 fell into four biological categories whose function is to regulate organ size and cell integrity (growth factors; transcriptional regulators; cell-to-cell adhesion; extracellular matrix), suggesting that these specific processes are important for adult lung health. Conclusions: Our study demonstrates the importance of lung development genes in regulating adult lung function and influencing both restrictive and obstructive patterns. Further investigation of these developmental pathways could lead to druggable targets. American Thoracic Society 2020-09-15 2020-09-15 /pmc/articles/PMC7491406/ /pubmed/32392078 http://dx.doi.org/10.1164/rccm.201912-2338OC Text en Copyright © 2020 by the American Thoracic Society https://creativecommons.org/licenses/by-nc-nd/4.0/This article is open access and distributed under the terms of the Creative Commons Attribution Non-Commercial No Derivatives License 4.0 (http://creativecommons.org/licenses/by-nc-nd/4.0/ (https://creativecommons.org/licenses/by-nc-nd/4.0/) ). For commercial usage and reprints, please contact Diane Gern (dgern@thoracic.org).
spellingShingle Original Articles
Portas, Laura
Pereira, Miguel
Shaheen, Seif O.
Wyss, Annah B.
London, Stephanie J.
Burney, Peter G. J.
Hind, Matthew
Dean, Charlotte H.
Minelli, Cosetta
Lung Development Genes and Adult Lung Function
title Lung Development Genes and Adult Lung Function
title_full Lung Development Genes and Adult Lung Function
title_fullStr Lung Development Genes and Adult Lung Function
title_full_unstemmed Lung Development Genes and Adult Lung Function
title_short Lung Development Genes and Adult Lung Function
title_sort lung development genes and adult lung function
topic Original Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7491406/
https://www.ncbi.nlm.nih.gov/pubmed/32392078
http://dx.doi.org/10.1164/rccm.201912-2338OC
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