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Development and validation of risk prediction models for COVID-19 positivity in a hospital setting
OBJECTIVES: To develop: (1) two validated risk prediction models for coronavirus disease-2019 (COVID-19) positivity using readily available parameters in a general hospital setting; (2) nomograms and probabilities to allow clinical utilisation. METHODS: Patients with and without COVID-19 were includ...
Autores principales: | , , , , , , , , , , , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
The Author(s). Published by Elsevier Ltd on behalf of International Society for Infectious Diseases.
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7491462/ https://www.ncbi.nlm.nih.gov/pubmed/32947055 http://dx.doi.org/10.1016/j.ijid.2020.09.022 |
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author | Ng, Ming-Yen Wan, Eric Yuk Fai Wong, Ho Yuen Frank Leung, Siu Ting Lee, Jonan Chun Yin Chin, Thomas Wing-Yan Lo, Christine Shing Yen Lui, Macy Mei-Sze Chan, Edward Hung Tat Fong, Ambrose Ho-Tung Fung, Sau Yung Ching, On Hang Chiu, Keith Wan-Hang Chung, Tom Wai Hin Vardhanbhuti, Varut Lam, Hiu Yin Sonia To, Kelvin Kai Wang Chiu, Jeffrey Long Fung Lam, Tina Poy Wing Khong, Pek Lan Liu, Raymond Wai To Chan, Johnny Wai Man Wu, Alan Ka Lun Lung, Kwok-Cheung Hung, Ivan Fan Ngai Lau, Chak Sing Kuo, Michael D. Ip, Mary Sau-Man |
author_facet | Ng, Ming-Yen Wan, Eric Yuk Fai Wong, Ho Yuen Frank Leung, Siu Ting Lee, Jonan Chun Yin Chin, Thomas Wing-Yan Lo, Christine Shing Yen Lui, Macy Mei-Sze Chan, Edward Hung Tat Fong, Ambrose Ho-Tung Fung, Sau Yung Ching, On Hang Chiu, Keith Wan-Hang Chung, Tom Wai Hin Vardhanbhuti, Varut Lam, Hiu Yin Sonia To, Kelvin Kai Wang Chiu, Jeffrey Long Fung Lam, Tina Poy Wing Khong, Pek Lan Liu, Raymond Wai To Chan, Johnny Wai Man Wu, Alan Ka Lun Lung, Kwok-Cheung Hung, Ivan Fan Ngai Lau, Chak Sing Kuo, Michael D. Ip, Mary Sau-Man |
author_sort | Ng, Ming-Yen |
collection | PubMed |
description | OBJECTIVES: To develop: (1) two validated risk prediction models for coronavirus disease-2019 (COVID-19) positivity using readily available parameters in a general hospital setting; (2) nomograms and probabilities to allow clinical utilisation. METHODS: Patients with and without COVID-19 were included from 4 Hong Kong hospitals. The database was randomly split into 2:1: for model development database (n = 895) and validation database (n = 435). Multivariable logistic regression was utilised for model creation and validated with the Hosmer–Lemeshow (H–L) test and calibration plot. Nomograms and probabilities set at 0.1, 0.2, 0.4 and 0.6 were calculated to determine sensitivity, specificity, positive predictive value (PPV) and negative predictive value (NPV). RESULTS: A total of 1330 patients (mean age 58.2 ± 24.5 years; 50.7% males; 296 COVID-19 positive) were recruited. The first prediction model developed had age, total white blood cell count, chest x-ray appearances and contact history as significant predictors (AUC = 0.911 [CI = 0.880−0.941]). The second model developed has the same variables except contact history (AUC = 0.880 [CI = 0.844−0.916]). Both were externally validated on the H–L test (p = 0.781 and 0.155, respectively) and calibration plot. Models were converted to nomograms. Lower probabilities give higher sensitivity and NPV; higher probabilities give higher specificity and PPV. CONCLUSION: Two simple-to-use validated nomograms were developed with excellent AUCs based on readily available parameters and can be considered for clinical utilisation. |
format | Online Article Text |
id | pubmed-7491462 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | The Author(s). Published by Elsevier Ltd on behalf of International Society for Infectious Diseases. |
record_format | MEDLINE/PubMed |
spelling | pubmed-74914622020-09-16 Development and validation of risk prediction models for COVID-19 positivity in a hospital setting Ng, Ming-Yen Wan, Eric Yuk Fai Wong, Ho Yuen Frank Leung, Siu Ting Lee, Jonan Chun Yin Chin, Thomas Wing-Yan Lo, Christine Shing Yen Lui, Macy Mei-Sze Chan, Edward Hung Tat Fong, Ambrose Ho-Tung Fung, Sau Yung Ching, On Hang Chiu, Keith Wan-Hang Chung, Tom Wai Hin Vardhanbhuti, Varut Lam, Hiu Yin Sonia To, Kelvin Kai Wang Chiu, Jeffrey Long Fung Lam, Tina Poy Wing Khong, Pek Lan Liu, Raymond Wai To Chan, Johnny Wai Man Wu, Alan Ka Lun Lung, Kwok-Cheung Hung, Ivan Fan Ngai Lau, Chak Sing Kuo, Michael D. Ip, Mary Sau-Man Int J Infect Dis Article OBJECTIVES: To develop: (1) two validated risk prediction models for coronavirus disease-2019 (COVID-19) positivity using readily available parameters in a general hospital setting; (2) nomograms and probabilities to allow clinical utilisation. METHODS: Patients with and without COVID-19 were included from 4 Hong Kong hospitals. The database was randomly split into 2:1: for model development database (n = 895) and validation database (n = 435). Multivariable logistic regression was utilised for model creation and validated with the Hosmer–Lemeshow (H–L) test and calibration plot. Nomograms and probabilities set at 0.1, 0.2, 0.4 and 0.6 were calculated to determine sensitivity, specificity, positive predictive value (PPV) and negative predictive value (NPV). RESULTS: A total of 1330 patients (mean age 58.2 ± 24.5 years; 50.7% males; 296 COVID-19 positive) were recruited. The first prediction model developed had age, total white blood cell count, chest x-ray appearances and contact history as significant predictors (AUC = 0.911 [CI = 0.880−0.941]). The second model developed has the same variables except contact history (AUC = 0.880 [CI = 0.844−0.916]). Both were externally validated on the H–L test (p = 0.781 and 0.155, respectively) and calibration plot. Models were converted to nomograms. Lower probabilities give higher sensitivity and NPV; higher probabilities give higher specificity and PPV. CONCLUSION: Two simple-to-use validated nomograms were developed with excellent AUCs based on readily available parameters and can be considered for clinical utilisation. The Author(s). Published by Elsevier Ltd on behalf of International Society for Infectious Diseases. 2020-12 2020-09-15 /pmc/articles/PMC7491462/ /pubmed/32947055 http://dx.doi.org/10.1016/j.ijid.2020.09.022 Text en © 2020 The Author(s) Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active. |
spellingShingle | Article Ng, Ming-Yen Wan, Eric Yuk Fai Wong, Ho Yuen Frank Leung, Siu Ting Lee, Jonan Chun Yin Chin, Thomas Wing-Yan Lo, Christine Shing Yen Lui, Macy Mei-Sze Chan, Edward Hung Tat Fong, Ambrose Ho-Tung Fung, Sau Yung Ching, On Hang Chiu, Keith Wan-Hang Chung, Tom Wai Hin Vardhanbhuti, Varut Lam, Hiu Yin Sonia To, Kelvin Kai Wang Chiu, Jeffrey Long Fung Lam, Tina Poy Wing Khong, Pek Lan Liu, Raymond Wai To Chan, Johnny Wai Man Wu, Alan Ka Lun Lung, Kwok-Cheung Hung, Ivan Fan Ngai Lau, Chak Sing Kuo, Michael D. Ip, Mary Sau-Man Development and validation of risk prediction models for COVID-19 positivity in a hospital setting |
title | Development and validation of risk prediction models for COVID-19 positivity in a hospital setting |
title_full | Development and validation of risk prediction models for COVID-19 positivity in a hospital setting |
title_fullStr | Development and validation of risk prediction models for COVID-19 positivity in a hospital setting |
title_full_unstemmed | Development and validation of risk prediction models for COVID-19 positivity in a hospital setting |
title_short | Development and validation of risk prediction models for COVID-19 positivity in a hospital setting |
title_sort | development and validation of risk prediction models for covid-19 positivity in a hospital setting |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7491462/ https://www.ncbi.nlm.nih.gov/pubmed/32947055 http://dx.doi.org/10.1016/j.ijid.2020.09.022 |
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