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Development and validation of risk prediction models for COVID-19 positivity in a hospital setting

OBJECTIVES: To develop: (1) two validated risk prediction models for coronavirus disease-2019 (COVID-19) positivity using readily available parameters in a general hospital setting; (2) nomograms and probabilities to allow clinical utilisation. METHODS: Patients with and without COVID-19 were includ...

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Autores principales: Ng, Ming-Yen, Wan, Eric Yuk Fai, Wong, Ho Yuen Frank, Leung, Siu Ting, Lee, Jonan Chun Yin, Chin, Thomas Wing-Yan, Lo, Christine Shing Yen, Lui, Macy Mei-Sze, Chan, Edward Hung Tat, Fong, Ambrose Ho-Tung, Fung, Sau Yung, Ching, On Hang, Chiu, Keith Wan-Hang, Chung, Tom Wai Hin, Vardhanbhuti, Varut, Lam, Hiu Yin Sonia, To, Kelvin Kai Wang, Chiu, Jeffrey Long Fung, Lam, Tina Poy Wing, Khong, Pek Lan, Liu, Raymond Wai To, Chan, Johnny Wai Man, Wu, Alan Ka Lun, Lung, Kwok-Cheung, Hung, Ivan Fan Ngai, Lau, Chak Sing, Kuo, Michael D., Ip, Mary Sau-Man
Formato: Online Artículo Texto
Lenguaje:English
Publicado: The Author(s). Published by Elsevier Ltd on behalf of International Society for Infectious Diseases. 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7491462/
https://www.ncbi.nlm.nih.gov/pubmed/32947055
http://dx.doi.org/10.1016/j.ijid.2020.09.022
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author Ng, Ming-Yen
Wan, Eric Yuk Fai
Wong, Ho Yuen Frank
Leung, Siu Ting
Lee, Jonan Chun Yin
Chin, Thomas Wing-Yan
Lo, Christine Shing Yen
Lui, Macy Mei-Sze
Chan, Edward Hung Tat
Fong, Ambrose Ho-Tung
Fung, Sau Yung
Ching, On Hang
Chiu, Keith Wan-Hang
Chung, Tom Wai Hin
Vardhanbhuti, Varut
Lam, Hiu Yin Sonia
To, Kelvin Kai Wang
Chiu, Jeffrey Long Fung
Lam, Tina Poy Wing
Khong, Pek Lan
Liu, Raymond Wai To
Chan, Johnny Wai Man
Wu, Alan Ka Lun
Lung, Kwok-Cheung
Hung, Ivan Fan Ngai
Lau, Chak Sing
Kuo, Michael D.
Ip, Mary Sau-Man
author_facet Ng, Ming-Yen
Wan, Eric Yuk Fai
Wong, Ho Yuen Frank
Leung, Siu Ting
Lee, Jonan Chun Yin
Chin, Thomas Wing-Yan
Lo, Christine Shing Yen
Lui, Macy Mei-Sze
Chan, Edward Hung Tat
Fong, Ambrose Ho-Tung
Fung, Sau Yung
Ching, On Hang
Chiu, Keith Wan-Hang
Chung, Tom Wai Hin
Vardhanbhuti, Varut
Lam, Hiu Yin Sonia
To, Kelvin Kai Wang
Chiu, Jeffrey Long Fung
Lam, Tina Poy Wing
Khong, Pek Lan
Liu, Raymond Wai To
Chan, Johnny Wai Man
Wu, Alan Ka Lun
Lung, Kwok-Cheung
Hung, Ivan Fan Ngai
Lau, Chak Sing
Kuo, Michael D.
Ip, Mary Sau-Man
author_sort Ng, Ming-Yen
collection PubMed
description OBJECTIVES: To develop: (1) two validated risk prediction models for coronavirus disease-2019 (COVID-19) positivity using readily available parameters in a general hospital setting; (2) nomograms and probabilities to allow clinical utilisation. METHODS: Patients with and without COVID-19 were included from 4 Hong Kong hospitals. The database was randomly split into 2:1: for model development database (n = 895) and validation database (n = 435). Multivariable logistic regression was utilised for model creation and validated with the Hosmer–Lemeshow (H–L) test and calibration plot. Nomograms and probabilities set at 0.1, 0.2, 0.4 and 0.6 were calculated to determine sensitivity, specificity, positive predictive value (PPV) and negative predictive value (NPV). RESULTS: A total of 1330 patients (mean age 58.2 ± 24.5 years; 50.7% males; 296 COVID-19 positive) were recruited. The first prediction model developed had age, total white blood cell count, chest x-ray appearances and contact history as significant predictors (AUC = 0.911 [CI = 0.880−0.941]). The second model developed has the same variables except contact history (AUC = 0.880 [CI = 0.844−0.916]). Both were externally validated on the H–L test (p = 0.781 and 0.155, respectively) and calibration plot. Models were converted to nomograms. Lower probabilities give higher sensitivity and NPV; higher probabilities give higher specificity and PPV. CONCLUSION: Two simple-to-use validated nomograms were developed with excellent AUCs based on readily available parameters and can be considered for clinical utilisation.
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spelling pubmed-74914622020-09-16 Development and validation of risk prediction models for COVID-19 positivity in a hospital setting Ng, Ming-Yen Wan, Eric Yuk Fai Wong, Ho Yuen Frank Leung, Siu Ting Lee, Jonan Chun Yin Chin, Thomas Wing-Yan Lo, Christine Shing Yen Lui, Macy Mei-Sze Chan, Edward Hung Tat Fong, Ambrose Ho-Tung Fung, Sau Yung Ching, On Hang Chiu, Keith Wan-Hang Chung, Tom Wai Hin Vardhanbhuti, Varut Lam, Hiu Yin Sonia To, Kelvin Kai Wang Chiu, Jeffrey Long Fung Lam, Tina Poy Wing Khong, Pek Lan Liu, Raymond Wai To Chan, Johnny Wai Man Wu, Alan Ka Lun Lung, Kwok-Cheung Hung, Ivan Fan Ngai Lau, Chak Sing Kuo, Michael D. Ip, Mary Sau-Man Int J Infect Dis Article OBJECTIVES: To develop: (1) two validated risk prediction models for coronavirus disease-2019 (COVID-19) positivity using readily available parameters in a general hospital setting; (2) nomograms and probabilities to allow clinical utilisation. METHODS: Patients with and without COVID-19 were included from 4 Hong Kong hospitals. The database was randomly split into 2:1: for model development database (n = 895) and validation database (n = 435). Multivariable logistic regression was utilised for model creation and validated with the Hosmer–Lemeshow (H–L) test and calibration plot. Nomograms and probabilities set at 0.1, 0.2, 0.4 and 0.6 were calculated to determine sensitivity, specificity, positive predictive value (PPV) and negative predictive value (NPV). RESULTS: A total of 1330 patients (mean age 58.2 ± 24.5 years; 50.7% males; 296 COVID-19 positive) were recruited. The first prediction model developed had age, total white blood cell count, chest x-ray appearances and contact history as significant predictors (AUC = 0.911 [CI = 0.880−0.941]). The second model developed has the same variables except contact history (AUC = 0.880 [CI = 0.844−0.916]). Both were externally validated on the H–L test (p = 0.781 and 0.155, respectively) and calibration plot. Models were converted to nomograms. Lower probabilities give higher sensitivity and NPV; higher probabilities give higher specificity and PPV. CONCLUSION: Two simple-to-use validated nomograms were developed with excellent AUCs based on readily available parameters and can be considered for clinical utilisation. The Author(s). Published by Elsevier Ltd on behalf of International Society for Infectious Diseases. 2020-12 2020-09-15 /pmc/articles/PMC7491462/ /pubmed/32947055 http://dx.doi.org/10.1016/j.ijid.2020.09.022 Text en © 2020 The Author(s) Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active.
spellingShingle Article
Ng, Ming-Yen
Wan, Eric Yuk Fai
Wong, Ho Yuen Frank
Leung, Siu Ting
Lee, Jonan Chun Yin
Chin, Thomas Wing-Yan
Lo, Christine Shing Yen
Lui, Macy Mei-Sze
Chan, Edward Hung Tat
Fong, Ambrose Ho-Tung
Fung, Sau Yung
Ching, On Hang
Chiu, Keith Wan-Hang
Chung, Tom Wai Hin
Vardhanbhuti, Varut
Lam, Hiu Yin Sonia
To, Kelvin Kai Wang
Chiu, Jeffrey Long Fung
Lam, Tina Poy Wing
Khong, Pek Lan
Liu, Raymond Wai To
Chan, Johnny Wai Man
Wu, Alan Ka Lun
Lung, Kwok-Cheung
Hung, Ivan Fan Ngai
Lau, Chak Sing
Kuo, Michael D.
Ip, Mary Sau-Man
Development and validation of risk prediction models for COVID-19 positivity in a hospital setting
title Development and validation of risk prediction models for COVID-19 positivity in a hospital setting
title_full Development and validation of risk prediction models for COVID-19 positivity in a hospital setting
title_fullStr Development and validation of risk prediction models for COVID-19 positivity in a hospital setting
title_full_unstemmed Development and validation of risk prediction models for COVID-19 positivity in a hospital setting
title_short Development and validation of risk prediction models for COVID-19 positivity in a hospital setting
title_sort development and validation of risk prediction models for covid-19 positivity in a hospital setting
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7491462/
https://www.ncbi.nlm.nih.gov/pubmed/32947055
http://dx.doi.org/10.1016/j.ijid.2020.09.022
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