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High-quality draft genome sequences of Pseudomonas monteilii DSM 14164(T), Pseudomonas mosselii DSM 17497(T), Pseudomonas plecoglossicida DSM 15088(T), Pseudomonas taiwanensis DSM 21245(T) and Pseudomonas vranovensis DSM 16006(T): taxonomic considerations
Pseudomonas is the bacterial genus of Gram-negative bacteria with the highest number of recognized species. It is divided phylogenetically into three lineages and at least 11 groups of species. The Pseudomonas putida group of species is one of the most versatile and best studied. It comprises 15 spe...
Autores principales: | , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Microbiology Society
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7491935/ https://www.ncbi.nlm.nih.gov/pubmed/32974501 http://dx.doi.org/10.1099/acmi.0.000067 |
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author | Peña, Arantxa Busquets, Antonio Gomila, Margarita Mulet, Magdalena Gomila, Rosa M. Garcia-Valdes, Elena Reddy, T. B. K. Huntemann, Marcel Varghese, Neha Ivanova, Natalia Chen, I-Min Göker, Markus Woyke, Tanja Klenk, Hans-Peter Kyrpides, Nikos Lalucat, Jorge |
author_facet | Peña, Arantxa Busquets, Antonio Gomila, Margarita Mulet, Magdalena Gomila, Rosa M. Garcia-Valdes, Elena Reddy, T. B. K. Huntemann, Marcel Varghese, Neha Ivanova, Natalia Chen, I-Min Göker, Markus Woyke, Tanja Klenk, Hans-Peter Kyrpides, Nikos Lalucat, Jorge |
author_sort | Peña, Arantxa |
collection | PubMed |
description | Pseudomonas is the bacterial genus of Gram-negative bacteria with the highest number of recognized species. It is divided phylogenetically into three lineages and at least 11 groups of species. The Pseudomonas putida group of species is one of the most versatile and best studied. It comprises 15 species with validly published names. As a part of the Genomic Encyclopedia of Bacteria and Archaea (GEBA) project, we present the genome sequences of the type strains of five species included in this group: Pseudomonas monteilii (DSM 14164(T)), Pseudomonas mosselii (DSM 17497(T)), Pseudomonas plecoglossicida (DSM 15088(T)), Pseudomonas taiwanensis (DSM 21245(T)) and Pseudomonas vranovensis (DSM 16006(T)). These strains represent species of environmental and also of clinical interest due to their pathogenic properties against humans and animals. Some strains of these species promote plant growth or act as plant pathogens. Their genome sizes are among the largest in the group, ranging from 5.3 to 6.3 Mbp. In addition, the genome sequences of the type strains in the Pseudomonas taxonomy were analysed via genome-wide taxonomic comparisons of ANIb, gANI and GGDC values among 130 Pseudomonas strains classified within the group. The results demonstrate that at least 36 genomic species can be delineated within the P. putida phylogenetic group of species. |
format | Online Article Text |
id | pubmed-7491935 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Microbiology Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-74919352020-09-23 High-quality draft genome sequences of Pseudomonas monteilii DSM 14164(T), Pseudomonas mosselii DSM 17497(T), Pseudomonas plecoglossicida DSM 15088(T), Pseudomonas taiwanensis DSM 21245(T) and Pseudomonas vranovensis DSM 16006(T): taxonomic considerations Peña, Arantxa Busquets, Antonio Gomila, Margarita Mulet, Magdalena Gomila, Rosa M. Garcia-Valdes, Elena Reddy, T. B. K. Huntemann, Marcel Varghese, Neha Ivanova, Natalia Chen, I-Min Göker, Markus Woyke, Tanja Klenk, Hans-Peter Kyrpides, Nikos Lalucat, Jorge Access Microbiol Research Article Pseudomonas is the bacterial genus of Gram-negative bacteria with the highest number of recognized species. It is divided phylogenetically into three lineages and at least 11 groups of species. The Pseudomonas putida group of species is one of the most versatile and best studied. It comprises 15 species with validly published names. As a part of the Genomic Encyclopedia of Bacteria and Archaea (GEBA) project, we present the genome sequences of the type strains of five species included in this group: Pseudomonas monteilii (DSM 14164(T)), Pseudomonas mosselii (DSM 17497(T)), Pseudomonas plecoglossicida (DSM 15088(T)), Pseudomonas taiwanensis (DSM 21245(T)) and Pseudomonas vranovensis (DSM 16006(T)). These strains represent species of environmental and also of clinical interest due to their pathogenic properties against humans and animals. Some strains of these species promote plant growth or act as plant pathogens. Their genome sizes are among the largest in the group, ranging from 5.3 to 6.3 Mbp. In addition, the genome sequences of the type strains in the Pseudomonas taxonomy were analysed via genome-wide taxonomic comparisons of ANIb, gANI and GGDC values among 130 Pseudomonas strains classified within the group. The results demonstrate that at least 36 genomic species can be delineated within the P. putida phylogenetic group of species. Microbiology Society 2019-10-29 /pmc/articles/PMC7491935/ /pubmed/32974501 http://dx.doi.org/10.1099/acmi.0.000067 Text en © 2019 The Authors http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License. |
spellingShingle | Research Article Peña, Arantxa Busquets, Antonio Gomila, Margarita Mulet, Magdalena Gomila, Rosa M. Garcia-Valdes, Elena Reddy, T. B. K. Huntemann, Marcel Varghese, Neha Ivanova, Natalia Chen, I-Min Göker, Markus Woyke, Tanja Klenk, Hans-Peter Kyrpides, Nikos Lalucat, Jorge High-quality draft genome sequences of Pseudomonas monteilii DSM 14164(T), Pseudomonas mosselii DSM 17497(T), Pseudomonas plecoglossicida DSM 15088(T), Pseudomonas taiwanensis DSM 21245(T) and Pseudomonas vranovensis DSM 16006(T): taxonomic considerations |
title | High-quality draft genome sequences of Pseudomonas monteilii DSM 14164(T), Pseudomonas mosselii DSM 17497(T), Pseudomonas plecoglossicida DSM 15088(T), Pseudomonas taiwanensis DSM 21245(T) and Pseudomonas vranovensis DSM 16006(T): taxonomic considerations |
title_full | High-quality draft genome sequences of Pseudomonas monteilii DSM 14164(T), Pseudomonas mosselii DSM 17497(T), Pseudomonas plecoglossicida DSM 15088(T), Pseudomonas taiwanensis DSM 21245(T) and Pseudomonas vranovensis DSM 16006(T): taxonomic considerations |
title_fullStr | High-quality draft genome sequences of Pseudomonas monteilii DSM 14164(T), Pseudomonas mosselii DSM 17497(T), Pseudomonas plecoglossicida DSM 15088(T), Pseudomonas taiwanensis DSM 21245(T) and Pseudomonas vranovensis DSM 16006(T): taxonomic considerations |
title_full_unstemmed | High-quality draft genome sequences of Pseudomonas monteilii DSM 14164(T), Pseudomonas mosselii DSM 17497(T), Pseudomonas plecoglossicida DSM 15088(T), Pseudomonas taiwanensis DSM 21245(T) and Pseudomonas vranovensis DSM 16006(T): taxonomic considerations |
title_short | High-quality draft genome sequences of Pseudomonas monteilii DSM 14164(T), Pseudomonas mosselii DSM 17497(T), Pseudomonas plecoglossicida DSM 15088(T), Pseudomonas taiwanensis DSM 21245(T) and Pseudomonas vranovensis DSM 16006(T): taxonomic considerations |
title_sort | high-quality draft genome sequences of pseudomonas monteilii dsm 14164(t), pseudomonas mosselii dsm 17497(t), pseudomonas plecoglossicida dsm 15088(t), pseudomonas taiwanensis dsm 21245(t) and pseudomonas vranovensis dsm 16006(t): taxonomic considerations |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7491935/ https://www.ncbi.nlm.nih.gov/pubmed/32974501 http://dx.doi.org/10.1099/acmi.0.000067 |
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