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IGF2BP3 May Contributes to Lung Tumorigenesis by Regulating the Alternative Splicing of PKM

RNA binding proteins (RBPs) play a key role in genome regulation. Here we report the post-transcript regulation of IGF2BP3, which belongs to the insulin-like growth factor 2 mRNA binding protein family. We used iRIP-seq and RNA-seq to analyze the transcript regulation and alternative splicing on IGF...

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Autores principales: Xueqing, Huang, Jun, Zhang, Yueqiang, Jiang, Xin, Liao, Liya, Hu, Yuanyuan, Fang, Yuting, Zhang, Hao, Zeng, Hua, Wu, Jian, Liu, Tiejun, Yin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7492387/
https://www.ncbi.nlm.nih.gov/pubmed/32984260
http://dx.doi.org/10.3389/fbioe.2020.00679
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author Xueqing, Huang
Jun, Zhang
Yueqiang, Jiang
Xin, Liao
Liya, Hu
Yuanyuan, Fang
Yuting, Zhang
Hao, Zeng
Hua, Wu
Jian, Liu
Tiejun, Yin
author_facet Xueqing, Huang
Jun, Zhang
Yueqiang, Jiang
Xin, Liao
Liya, Hu
Yuanyuan, Fang
Yuting, Zhang
Hao, Zeng
Hua, Wu
Jian, Liu
Tiejun, Yin
author_sort Xueqing, Huang
collection PubMed
description RNA binding proteins (RBPs) play a key role in genome regulation. Here we report the post-transcript regulation of IGF2BP3, which belongs to the insulin-like growth factor 2 mRNA binding protein family. We used iRIP-seq and RNA-seq to analyze the transcript regulation and alternative splicing on IGF2BP3 treated with overexpression cells and control. Overexpressed IGF2BP3 has broadly increased genes expression which involved in G-protein coupled receptor signaling pathway, positive regulation of cell proliferation, and signal transduction. IGF2BP3 regulated alternative splicing of multiple genes mainly clustered at response to hypoxia, negative regulation of transcription, and embryonic development. This study first provides alternative splicing analysis on transcription level of IGF2BP3 regulation, which laid the foundation for later research on IGF2BP3 critical functions.
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spelling pubmed-74923872020-09-25 IGF2BP3 May Contributes to Lung Tumorigenesis by Regulating the Alternative Splicing of PKM Xueqing, Huang Jun, Zhang Yueqiang, Jiang Xin, Liao Liya, Hu Yuanyuan, Fang Yuting, Zhang Hao, Zeng Hua, Wu Jian, Liu Tiejun, Yin Front Bioeng Biotechnol Bioengineering and Biotechnology RNA binding proteins (RBPs) play a key role in genome regulation. Here we report the post-transcript regulation of IGF2BP3, which belongs to the insulin-like growth factor 2 mRNA binding protein family. We used iRIP-seq and RNA-seq to analyze the transcript regulation and alternative splicing on IGF2BP3 treated with overexpression cells and control. Overexpressed IGF2BP3 has broadly increased genes expression which involved in G-protein coupled receptor signaling pathway, positive regulation of cell proliferation, and signal transduction. IGF2BP3 regulated alternative splicing of multiple genes mainly clustered at response to hypoxia, negative regulation of transcription, and embryonic development. This study first provides alternative splicing analysis on transcription level of IGF2BP3 regulation, which laid the foundation for later research on IGF2BP3 critical functions. Frontiers Media S.A. 2020-09-02 /pmc/articles/PMC7492387/ /pubmed/32984260 http://dx.doi.org/10.3389/fbioe.2020.00679 Text en Copyright © 2020 Xueqing, Jun, Yueqiang, Xin, Liya, Yuanyuan, Yuting, Hao, Hua, Jian and Tiejun. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Bioengineering and Biotechnology
Xueqing, Huang
Jun, Zhang
Yueqiang, Jiang
Xin, Liao
Liya, Hu
Yuanyuan, Fang
Yuting, Zhang
Hao, Zeng
Hua, Wu
Jian, Liu
Tiejun, Yin
IGF2BP3 May Contributes to Lung Tumorigenesis by Regulating the Alternative Splicing of PKM
title IGF2BP3 May Contributes to Lung Tumorigenesis by Regulating the Alternative Splicing of PKM
title_full IGF2BP3 May Contributes to Lung Tumorigenesis by Regulating the Alternative Splicing of PKM
title_fullStr IGF2BP3 May Contributes to Lung Tumorigenesis by Regulating the Alternative Splicing of PKM
title_full_unstemmed IGF2BP3 May Contributes to Lung Tumorigenesis by Regulating the Alternative Splicing of PKM
title_short IGF2BP3 May Contributes to Lung Tumorigenesis by Regulating the Alternative Splicing of PKM
title_sort igf2bp3 may contributes to lung tumorigenesis by regulating the alternative splicing of pkm
topic Bioengineering and Biotechnology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7492387/
https://www.ncbi.nlm.nih.gov/pubmed/32984260
http://dx.doi.org/10.3389/fbioe.2020.00679
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