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Tools for generating and analyzing glycan microarray data
Glycans are one of the major biological polymers found in the mammalian body. They play a vital role in a number of physiologic and pathologic conditions. Glycan microarrays allow a plethora of information to be obtained on protein–glycan binding interactions. In this review, we describe the intrica...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Beilstein-Institut
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7492694/ https://www.ncbi.nlm.nih.gov/pubmed/32983270 http://dx.doi.org/10.3762/bjoc.16.187 |
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author | Mehta, Akul Y Heimburg-Molinaro, Jamie Cummings, Richard D |
author_facet | Mehta, Akul Y Heimburg-Molinaro, Jamie Cummings, Richard D |
author_sort | Mehta, Akul Y |
collection | PubMed |
description | Glycans are one of the major biological polymers found in the mammalian body. They play a vital role in a number of physiologic and pathologic conditions. Glycan microarrays allow a plethora of information to be obtained on protein–glycan binding interactions. In this review, we describe the intricacies of the generation of glycan microarray data and the experimental methods for studying binding. We highlight the importance of this knowledge before moving on to the data analysis. We then highlight a number of tools for the analysis of glycan microarray data such as data repositories, data visualization and manual analysis tools, automated analysis tools and structural informatics tools. |
format | Online Article Text |
id | pubmed-7492694 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Beilstein-Institut |
record_format | MEDLINE/PubMed |
spelling | pubmed-74926942020-09-24 Tools for generating and analyzing glycan microarray data Mehta, Akul Y Heimburg-Molinaro, Jamie Cummings, Richard D Beilstein J Org Chem Review Glycans are one of the major biological polymers found in the mammalian body. They play a vital role in a number of physiologic and pathologic conditions. Glycan microarrays allow a plethora of information to be obtained on protein–glycan binding interactions. In this review, we describe the intricacies of the generation of glycan microarray data and the experimental methods for studying binding. We highlight the importance of this knowledge before moving on to the data analysis. We then highlight a number of tools for the analysis of glycan microarray data such as data repositories, data visualization and manual analysis tools, automated analysis tools and structural informatics tools. Beilstein-Institut 2020-09-10 /pmc/articles/PMC7492694/ /pubmed/32983270 http://dx.doi.org/10.3762/bjoc.16.187 Text en Copyright © 2020, Mehta et al. https://creativecommons.org/licenses/by/4.0https://www.beilstein-journals.org/bjoc/termsThis is an Open Access article under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0). Please note that the reuse, redistribution and reproduction in particular requires that the authors and source are credited. The license is subject to the Beilstein Journal of Organic Chemistry terms and conditions: (https://www.beilstein-journals.org/bjoc/terms) |
spellingShingle | Review Mehta, Akul Y Heimburg-Molinaro, Jamie Cummings, Richard D Tools for generating and analyzing glycan microarray data |
title | Tools for generating and analyzing glycan microarray data |
title_full | Tools for generating and analyzing glycan microarray data |
title_fullStr | Tools for generating and analyzing glycan microarray data |
title_full_unstemmed | Tools for generating and analyzing glycan microarray data |
title_short | Tools for generating and analyzing glycan microarray data |
title_sort | tools for generating and analyzing glycan microarray data |
topic | Review |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7492694/ https://www.ncbi.nlm.nih.gov/pubmed/32983270 http://dx.doi.org/10.3762/bjoc.16.187 |
work_keys_str_mv | AT mehtaakuly toolsforgeneratingandanalyzingglycanmicroarraydata AT heimburgmolinarojamie toolsforgeneratingandanalyzingglycanmicroarraydata AT cummingsrichardd toolsforgeneratingandanalyzingglycanmicroarraydata |