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Tools for generating and analyzing glycan microarray data

Glycans are one of the major biological polymers found in the mammalian body. They play a vital role in a number of physiologic and pathologic conditions. Glycan microarrays allow a plethora of information to be obtained on protein–glycan binding interactions. In this review, we describe the intrica...

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Autores principales: Mehta, Akul Y, Heimburg-Molinaro, Jamie, Cummings, Richard D
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Beilstein-Institut 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7492694/
https://www.ncbi.nlm.nih.gov/pubmed/32983270
http://dx.doi.org/10.3762/bjoc.16.187
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author Mehta, Akul Y
Heimburg-Molinaro, Jamie
Cummings, Richard D
author_facet Mehta, Akul Y
Heimburg-Molinaro, Jamie
Cummings, Richard D
author_sort Mehta, Akul Y
collection PubMed
description Glycans are one of the major biological polymers found in the mammalian body. They play a vital role in a number of physiologic and pathologic conditions. Glycan microarrays allow a plethora of information to be obtained on protein–glycan binding interactions. In this review, we describe the intricacies of the generation of glycan microarray data and the experimental methods for studying binding. We highlight the importance of this knowledge before moving on to the data analysis. We then highlight a number of tools for the analysis of glycan microarray data such as data repositories, data visualization and manual analysis tools, automated analysis tools and structural informatics tools.
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spelling pubmed-74926942020-09-24 Tools for generating and analyzing glycan microarray data Mehta, Akul Y Heimburg-Molinaro, Jamie Cummings, Richard D Beilstein J Org Chem Review Glycans are one of the major biological polymers found in the mammalian body. They play a vital role in a number of physiologic and pathologic conditions. Glycan microarrays allow a plethora of information to be obtained on protein–glycan binding interactions. In this review, we describe the intricacies of the generation of glycan microarray data and the experimental methods for studying binding. We highlight the importance of this knowledge before moving on to the data analysis. We then highlight a number of tools for the analysis of glycan microarray data such as data repositories, data visualization and manual analysis tools, automated analysis tools and structural informatics tools. Beilstein-Institut 2020-09-10 /pmc/articles/PMC7492694/ /pubmed/32983270 http://dx.doi.org/10.3762/bjoc.16.187 Text en Copyright © 2020, Mehta et al. https://creativecommons.org/licenses/by/4.0https://www.beilstein-journals.org/bjoc/termsThis is an Open Access article under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0). Please note that the reuse, redistribution and reproduction in particular requires that the authors and source are credited. The license is subject to the Beilstein Journal of Organic Chemistry terms and conditions: (https://www.beilstein-journals.org/bjoc/terms)
spellingShingle Review
Mehta, Akul Y
Heimburg-Molinaro, Jamie
Cummings, Richard D
Tools for generating and analyzing glycan microarray data
title Tools for generating and analyzing glycan microarray data
title_full Tools for generating and analyzing glycan microarray data
title_fullStr Tools for generating and analyzing glycan microarray data
title_full_unstemmed Tools for generating and analyzing glycan microarray data
title_short Tools for generating and analyzing glycan microarray data
title_sort tools for generating and analyzing glycan microarray data
topic Review
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7492694/
https://www.ncbi.nlm.nih.gov/pubmed/32983270
http://dx.doi.org/10.3762/bjoc.16.187
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