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Genome resequencing data for Iranian local dogs and wolves
OBJECTIVE: The data provided herein represent the whole-genome resequencing data related to three wolves and three Iranian local dogs. The understanding of genome evolution during animal domestication is an interesting subject in genome biology. Dog is an excellent model for understanding of domesti...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7493879/ https://www.ncbi.nlm.nih.gov/pubmed/32938490 http://dx.doi.org/10.1186/s13104-020-05271-3 |
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author | Amiri Ghanatsaman, Zeinab Wang, Guo-Dong Asadi Fozi, Masood Zhang, Ya-Ping Esmailizadeh, Ali |
author_facet | Amiri Ghanatsaman, Zeinab Wang, Guo-Dong Asadi Fozi, Masood Zhang, Ya-Ping Esmailizadeh, Ali |
author_sort | Amiri Ghanatsaman, Zeinab |
collection | PubMed |
description | OBJECTIVE: The data provided herein represent the whole-genome resequencing data related to three wolves and three Iranian local dogs. The understanding of genome evolution during animal domestication is an interesting subject in genome biology. Dog is an excellent model for understanding of domestication due to its considerable variety of behavioral and physical traits. The Zagros area of current day Iran has been identified as one of the initial centers of animal domestication. The availability of the complete genome sequences of Iranian local canids can be a valuable resource for researchers to address questions and testing hypotheses on the dog domestication process. DATA DESCRIPTION: We collected blood samples from six Iranian local canids including two hunting dogs (Saluki breed), a mastiff dog (Qahderijani ecotype) and three wolves. We extracted genomic DNA from blood samples. Sequence data were produced using the Illumina HiSeq 2500 system. All sequence data are available in the National Genomics Data Center (NGDC), Genome Sequence Archive (GSA) database under the accession of CRA001324 and the National Center for Biotechnology Information (NCBI) under the accession of PRJNA639312. The short-read sequences with the mean depth of 16X were aligned to the dog reference genome (CanFam3.1) and achieved 99% coverage of the reference assembly. The obtained information from this experiment will be useful in evolutionary biology. |
format | Online Article Text |
id | pubmed-7493879 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-74938792020-09-23 Genome resequencing data for Iranian local dogs and wolves Amiri Ghanatsaman, Zeinab Wang, Guo-Dong Asadi Fozi, Masood Zhang, Ya-Ping Esmailizadeh, Ali BMC Res Notes Data Note OBJECTIVE: The data provided herein represent the whole-genome resequencing data related to three wolves and three Iranian local dogs. The understanding of genome evolution during animal domestication is an interesting subject in genome biology. Dog is an excellent model for understanding of domestication due to its considerable variety of behavioral and physical traits. The Zagros area of current day Iran has been identified as one of the initial centers of animal domestication. The availability of the complete genome sequences of Iranian local canids can be a valuable resource for researchers to address questions and testing hypotheses on the dog domestication process. DATA DESCRIPTION: We collected blood samples from six Iranian local canids including two hunting dogs (Saluki breed), a mastiff dog (Qahderijani ecotype) and three wolves. We extracted genomic DNA from blood samples. Sequence data were produced using the Illumina HiSeq 2500 system. All sequence data are available in the National Genomics Data Center (NGDC), Genome Sequence Archive (GSA) database under the accession of CRA001324 and the National Center for Biotechnology Information (NCBI) under the accession of PRJNA639312. The short-read sequences with the mean depth of 16X were aligned to the dog reference genome (CanFam3.1) and achieved 99% coverage of the reference assembly. The obtained information from this experiment will be useful in evolutionary biology. BioMed Central 2020-09-16 /pmc/articles/PMC7493879/ /pubmed/32938490 http://dx.doi.org/10.1186/s13104-020-05271-3 Text en © The Author(s) 2020 Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data. |
spellingShingle | Data Note Amiri Ghanatsaman, Zeinab Wang, Guo-Dong Asadi Fozi, Masood Zhang, Ya-Ping Esmailizadeh, Ali Genome resequencing data for Iranian local dogs and wolves |
title | Genome resequencing data for Iranian local dogs and wolves |
title_full | Genome resequencing data for Iranian local dogs and wolves |
title_fullStr | Genome resequencing data for Iranian local dogs and wolves |
title_full_unstemmed | Genome resequencing data for Iranian local dogs and wolves |
title_short | Genome resequencing data for Iranian local dogs and wolves |
title_sort | genome resequencing data for iranian local dogs and wolves |
topic | Data Note |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7493879/ https://www.ncbi.nlm.nih.gov/pubmed/32938490 http://dx.doi.org/10.1186/s13104-020-05271-3 |
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