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Data on draft genome sequence of stenotrophomonas sp. SAM-B isolated from a mineral cold spring located in Tyva, southern Siberia

Stenotrophomonas sp. SAM-B was isolated from Uzharlyg Mineral Cold Spring, Samagaltay Settlement, Republic of Tyva (Southern Siberia), Russian Federation. A whole genome sequencing of Stenotrophomonas sp. SAM-B was performed using an Illumina MiSeq platform. The resulting draft genome contains 4,253...

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Autores principales: Kashkak, Elena S., Kataev, Vladimir Ya, Khlopko, Yuri A., Budagaeva, Valentina G., Danilova, Erzhena V., Oorzhak, Urana S., Dagurova, Olga P., Plotnikov, Andrey O.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7494669/
https://www.ncbi.nlm.nih.gov/pubmed/32984471
http://dx.doi.org/10.1016/j.dib.2020.106278
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author Kashkak, Elena S.
Kataev, Vladimir Ya
Khlopko, Yuri A.
Budagaeva, Valentina G.
Danilova, Erzhena V.
Oorzhak, Urana S.
Dagurova, Olga P.
Plotnikov, Andrey O.
author_facet Kashkak, Elena S.
Kataev, Vladimir Ya
Khlopko, Yuri A.
Budagaeva, Valentina G.
Danilova, Erzhena V.
Oorzhak, Urana S.
Dagurova, Olga P.
Plotnikov, Andrey O.
author_sort Kashkak, Elena S.
collection PubMed
description Stenotrophomonas sp. SAM-B was isolated from Uzharlyg Mineral Cold Spring, Samagaltay Settlement, Republic of Tyva (Southern Siberia), Russian Federation. A whole genome sequencing of Stenotrophomonas sp. SAM-B was performed using an Illumina MiSeq platform. The resulting draft genome contains 4,253,956 bp with 66.48% GC-content and 71 contigs; the longest contig contains 968,648 bp, and the N(50) has a length of 401,736 bp. The genome includes 3816 protein-coding genes, among which 23 are responsible for protein degradation, 65 are associated with stress response, and 31 are associated with virulence, disease, and defense, including beta-lactamase and resistance to fluoroquinolones. The genome data on the SAM-B strain provides fundamental knowledge that would allow a better understanding of the microorganisms inhabiting cold water environments. Moreover, the results of the genome annotation indicated that diverse metabolic pathways are encoded in the genome of the SAM-B strain and that it has biotechnological potential. The draft genome sequence of Stenotrophomonas sp. SAM-B has been deposited in DDBJ/ENA/GenBank under the accession number JABBXB000000000; the accession number of the genome sequence referred to in this paper is JABBXB010000000.
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spelling pubmed-74946692020-09-24 Data on draft genome sequence of stenotrophomonas sp. SAM-B isolated from a mineral cold spring located in Tyva, southern Siberia Kashkak, Elena S. Kataev, Vladimir Ya Khlopko, Yuri A. Budagaeva, Valentina G. Danilova, Erzhena V. Oorzhak, Urana S. Dagurova, Olga P. Plotnikov, Andrey O. Data Brief Data Article Stenotrophomonas sp. SAM-B was isolated from Uzharlyg Mineral Cold Spring, Samagaltay Settlement, Republic of Tyva (Southern Siberia), Russian Federation. A whole genome sequencing of Stenotrophomonas sp. SAM-B was performed using an Illumina MiSeq platform. The resulting draft genome contains 4,253,956 bp with 66.48% GC-content and 71 contigs; the longest contig contains 968,648 bp, and the N(50) has a length of 401,736 bp. The genome includes 3816 protein-coding genes, among which 23 are responsible for protein degradation, 65 are associated with stress response, and 31 are associated with virulence, disease, and defense, including beta-lactamase and resistance to fluoroquinolones. The genome data on the SAM-B strain provides fundamental knowledge that would allow a better understanding of the microorganisms inhabiting cold water environments. Moreover, the results of the genome annotation indicated that diverse metabolic pathways are encoded in the genome of the SAM-B strain and that it has biotechnological potential. The draft genome sequence of Stenotrophomonas sp. SAM-B has been deposited in DDBJ/ENA/GenBank under the accession number JABBXB000000000; the accession number of the genome sequence referred to in this paper is JABBXB010000000. Elsevier 2020-09-04 /pmc/articles/PMC7494669/ /pubmed/32984471 http://dx.doi.org/10.1016/j.dib.2020.106278 Text en © 2020 The Authors. Published by Elsevier Inc. http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Data Article
Kashkak, Elena S.
Kataev, Vladimir Ya
Khlopko, Yuri A.
Budagaeva, Valentina G.
Danilova, Erzhena V.
Oorzhak, Urana S.
Dagurova, Olga P.
Plotnikov, Andrey O.
Data on draft genome sequence of stenotrophomonas sp. SAM-B isolated from a mineral cold spring located in Tyva, southern Siberia
title Data on draft genome sequence of stenotrophomonas sp. SAM-B isolated from a mineral cold spring located in Tyva, southern Siberia
title_full Data on draft genome sequence of stenotrophomonas sp. SAM-B isolated from a mineral cold spring located in Tyva, southern Siberia
title_fullStr Data on draft genome sequence of stenotrophomonas sp. SAM-B isolated from a mineral cold spring located in Tyva, southern Siberia
title_full_unstemmed Data on draft genome sequence of stenotrophomonas sp. SAM-B isolated from a mineral cold spring located in Tyva, southern Siberia
title_short Data on draft genome sequence of stenotrophomonas sp. SAM-B isolated from a mineral cold spring located in Tyva, southern Siberia
title_sort data on draft genome sequence of stenotrophomonas sp. sam-b isolated from a mineral cold spring located in tyva, southern siberia
topic Data Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7494669/
https://www.ncbi.nlm.nih.gov/pubmed/32984471
http://dx.doi.org/10.1016/j.dib.2020.106278
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