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Data on draft genome sequence of stenotrophomonas sp. SAM-B isolated from a mineral cold spring located in Tyva, southern Siberia
Stenotrophomonas sp. SAM-B was isolated from Uzharlyg Mineral Cold Spring, Samagaltay Settlement, Republic of Tyva (Southern Siberia), Russian Federation. A whole genome sequencing of Stenotrophomonas sp. SAM-B was performed using an Illumina MiSeq platform. The resulting draft genome contains 4,253...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Elsevier
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7494669/ https://www.ncbi.nlm.nih.gov/pubmed/32984471 http://dx.doi.org/10.1016/j.dib.2020.106278 |
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author | Kashkak, Elena S. Kataev, Vladimir Ya Khlopko, Yuri A. Budagaeva, Valentina G. Danilova, Erzhena V. Oorzhak, Urana S. Dagurova, Olga P. Plotnikov, Andrey O. |
author_facet | Kashkak, Elena S. Kataev, Vladimir Ya Khlopko, Yuri A. Budagaeva, Valentina G. Danilova, Erzhena V. Oorzhak, Urana S. Dagurova, Olga P. Plotnikov, Andrey O. |
author_sort | Kashkak, Elena S. |
collection | PubMed |
description | Stenotrophomonas sp. SAM-B was isolated from Uzharlyg Mineral Cold Spring, Samagaltay Settlement, Republic of Tyva (Southern Siberia), Russian Federation. A whole genome sequencing of Stenotrophomonas sp. SAM-B was performed using an Illumina MiSeq platform. The resulting draft genome contains 4,253,956 bp with 66.48% GC-content and 71 contigs; the longest contig contains 968,648 bp, and the N(50) has a length of 401,736 bp. The genome includes 3816 protein-coding genes, among which 23 are responsible for protein degradation, 65 are associated with stress response, and 31 are associated with virulence, disease, and defense, including beta-lactamase and resistance to fluoroquinolones. The genome data on the SAM-B strain provides fundamental knowledge that would allow a better understanding of the microorganisms inhabiting cold water environments. Moreover, the results of the genome annotation indicated that diverse metabolic pathways are encoded in the genome of the SAM-B strain and that it has biotechnological potential. The draft genome sequence of Stenotrophomonas sp. SAM-B has been deposited in DDBJ/ENA/GenBank under the accession number JABBXB000000000; the accession number of the genome sequence referred to in this paper is JABBXB010000000. |
format | Online Article Text |
id | pubmed-7494669 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-74946692020-09-24 Data on draft genome sequence of stenotrophomonas sp. SAM-B isolated from a mineral cold spring located in Tyva, southern Siberia Kashkak, Elena S. Kataev, Vladimir Ya Khlopko, Yuri A. Budagaeva, Valentina G. Danilova, Erzhena V. Oorzhak, Urana S. Dagurova, Olga P. Plotnikov, Andrey O. Data Brief Data Article Stenotrophomonas sp. SAM-B was isolated from Uzharlyg Mineral Cold Spring, Samagaltay Settlement, Republic of Tyva (Southern Siberia), Russian Federation. A whole genome sequencing of Stenotrophomonas sp. SAM-B was performed using an Illumina MiSeq platform. The resulting draft genome contains 4,253,956 bp with 66.48% GC-content and 71 contigs; the longest contig contains 968,648 bp, and the N(50) has a length of 401,736 bp. The genome includes 3816 protein-coding genes, among which 23 are responsible for protein degradation, 65 are associated with stress response, and 31 are associated with virulence, disease, and defense, including beta-lactamase and resistance to fluoroquinolones. The genome data on the SAM-B strain provides fundamental knowledge that would allow a better understanding of the microorganisms inhabiting cold water environments. Moreover, the results of the genome annotation indicated that diverse metabolic pathways are encoded in the genome of the SAM-B strain and that it has biotechnological potential. The draft genome sequence of Stenotrophomonas sp. SAM-B has been deposited in DDBJ/ENA/GenBank under the accession number JABBXB000000000; the accession number of the genome sequence referred to in this paper is JABBXB010000000. Elsevier 2020-09-04 /pmc/articles/PMC7494669/ /pubmed/32984471 http://dx.doi.org/10.1016/j.dib.2020.106278 Text en © 2020 The Authors. Published by Elsevier Inc. http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Data Article Kashkak, Elena S. Kataev, Vladimir Ya Khlopko, Yuri A. Budagaeva, Valentina G. Danilova, Erzhena V. Oorzhak, Urana S. Dagurova, Olga P. Plotnikov, Andrey O. Data on draft genome sequence of stenotrophomonas sp. SAM-B isolated from a mineral cold spring located in Tyva, southern Siberia |
title | Data on draft genome sequence of stenotrophomonas sp. SAM-B isolated from a mineral cold spring located in Tyva, southern Siberia |
title_full | Data on draft genome sequence of stenotrophomonas sp. SAM-B isolated from a mineral cold spring located in Tyva, southern Siberia |
title_fullStr | Data on draft genome sequence of stenotrophomonas sp. SAM-B isolated from a mineral cold spring located in Tyva, southern Siberia |
title_full_unstemmed | Data on draft genome sequence of stenotrophomonas sp. SAM-B isolated from a mineral cold spring located in Tyva, southern Siberia |
title_short | Data on draft genome sequence of stenotrophomonas sp. SAM-B isolated from a mineral cold spring located in Tyva, southern Siberia |
title_sort | data on draft genome sequence of stenotrophomonas sp. sam-b isolated from a mineral cold spring located in tyva, southern siberia |
topic | Data Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7494669/ https://www.ncbi.nlm.nih.gov/pubmed/32984471 http://dx.doi.org/10.1016/j.dib.2020.106278 |
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