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Bayesian optimisation of restriction zones for bluetongue control

We investigate the restriction of animal movements as a method to control the spread of bluetongue, an infectious disease of livestock that is becoming increasingly prevalent due to the onset of climate change. We derive control policies for the UK that minimise the number of infected farms during a...

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Autores principales: Spooner, Thomas, Jones, Anne E., Fearnley, John, Savani, Rahul, Turner, Joanne, Baylis, Matthew
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7494917/
https://www.ncbi.nlm.nih.gov/pubmed/32934252
http://dx.doi.org/10.1038/s41598-020-71856-4
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author Spooner, Thomas
Jones, Anne E.
Fearnley, John
Savani, Rahul
Turner, Joanne
Baylis, Matthew
author_facet Spooner, Thomas
Jones, Anne E.
Fearnley, John
Savani, Rahul
Turner, Joanne
Baylis, Matthew
author_sort Spooner, Thomas
collection PubMed
description We investigate the restriction of animal movements as a method to control the spread of bluetongue, an infectious disease of livestock that is becoming increasingly prevalent due to the onset of climate change. We derive control policies for the UK that minimise the number of infected farms during an outbreak using Bayesian optimisation and a simulation-based model of BT. Two cases are presented: first, where the region of introduction is randomly selected from England and Wales to find a generalised strategy. This “national” model is shown to be just as effective at subduing the spread of bluetongue as the current strategy of the UK government. Our proposed controls are simpler to implement, affect fewer farms in the process and, in so doing, minimise the potential economic implications. Second, we consider policies that are tailored to the specific region in which the first infection was detected. Seven different regions in the UK were explored and improvements in efficiency from the use of specialised policies presented. As a consequence of the increasing temperatures associated with climate change, efficient control measures for vector-borne diseases such as this are expected to become increasingly important. Our work demonstrates the potential value of using Bayesian optimisation in developing cost-effective disease management strategies.
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spelling pubmed-74949172020-09-18 Bayesian optimisation of restriction zones for bluetongue control Spooner, Thomas Jones, Anne E. Fearnley, John Savani, Rahul Turner, Joanne Baylis, Matthew Sci Rep Article We investigate the restriction of animal movements as a method to control the spread of bluetongue, an infectious disease of livestock that is becoming increasingly prevalent due to the onset of climate change. We derive control policies for the UK that minimise the number of infected farms during an outbreak using Bayesian optimisation and a simulation-based model of BT. Two cases are presented: first, where the region of introduction is randomly selected from England and Wales to find a generalised strategy. This “national” model is shown to be just as effective at subduing the spread of bluetongue as the current strategy of the UK government. Our proposed controls are simpler to implement, affect fewer farms in the process and, in so doing, minimise the potential economic implications. Second, we consider policies that are tailored to the specific region in which the first infection was detected. Seven different regions in the UK were explored and improvements in efficiency from the use of specialised policies presented. As a consequence of the increasing temperatures associated with climate change, efficient control measures for vector-borne diseases such as this are expected to become increasingly important. Our work demonstrates the potential value of using Bayesian optimisation in developing cost-effective disease management strategies. Nature Publishing Group UK 2020-09-15 /pmc/articles/PMC7494917/ /pubmed/32934252 http://dx.doi.org/10.1038/s41598-020-71856-4 Text en © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Spooner, Thomas
Jones, Anne E.
Fearnley, John
Savani, Rahul
Turner, Joanne
Baylis, Matthew
Bayesian optimisation of restriction zones for bluetongue control
title Bayesian optimisation of restriction zones for bluetongue control
title_full Bayesian optimisation of restriction zones for bluetongue control
title_fullStr Bayesian optimisation of restriction zones for bluetongue control
title_full_unstemmed Bayesian optimisation of restriction zones for bluetongue control
title_short Bayesian optimisation of restriction zones for bluetongue control
title_sort bayesian optimisation of restriction zones for bluetongue control
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7494917/
https://www.ncbi.nlm.nih.gov/pubmed/32934252
http://dx.doi.org/10.1038/s41598-020-71856-4
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